Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 2.8e-213 745.0 367 100.0
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 2.2e-205 718.8 367 96.5
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 7.0e-204 713.8 367 95.6
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 5.6e-169 597.8 367 81.5
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.6e-168 596.3 311 91.3
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 3.1e-159 565.5 367 79.3
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 2.6e-150 535.8 372 71.8
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 7.3e-145 517.7 379 71.8
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 2.4e-143 512.7 347 74.1
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 3.1e-143 512.3 372 69.6
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 3.1e-143 512.3 356 73.3
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 5.2e-143 511.5 364 70.6
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.2e-142 510.4 359 72.4
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.0e-142 509.6 356 73.0
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 5.8e-142 508.1 293 85.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.7e-141 506.5 363 71.3
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 8.4e-141 504.2 369 70.2
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.9e-140 503.1 355 71.3
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.9e-140 503.1 355 71.3
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.9e-140 503.1 366 71.3
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.4e-140 502.7 365 70.7
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.6e-139 500.0 363 71.3
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.0e-138 497.3 360 70.6
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.3e-138 496.9 365 69.9
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.3e-138 496.9 366 69.4
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.3e-138 496.1 366 69.7
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 5.1e-138 495.0 361 68.1
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.1e-137 493.8 355 72.1
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 9.6e-137 490.7 333 72.1
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 9.6e-137 490.7 364 68.4
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 1.3e-136 490.3 362 68.5
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.6e-136 490.0 357 69.5
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 2.1e-136 489.6 353 71.1
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.2e-136 488.0 367 68.7
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 8.1e-136 487.6 308 76.0
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 1.8e-135 486.5 365 69.6
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 4.0e-135 485.3 347 69.7
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 4.0e-135 485.3 345 69.9
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 9.0e-135 484.2 337 72.1
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.2e-134 483.8 321 72.6
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.5e-134 483.4 359 69.9
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 2.0e-134 483.0 326 73.0
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.6e-134 482.6 351 70.9
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 3.8e-133 478.8 389 65.0
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 4.9e-133 478.4 308 76.6
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 6.4e-133 478.0 360 68.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 6.4e-133 478.0 331 72.5
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.4e-132 476.9 378 66.9
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.9e-132 476.5 308 76.3
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.9e-132 476.5 358 69.0
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.2e-131 473.8 313 73.2
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.6e-131 473.4 366 66.9
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 3.5e-131 472.2 349 69.3
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 4.6e-131 471.9 363 66.7
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 6.0e-131 471.5 356 67.7
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 7.9e-131 471.1 299 75.9
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.0e-130 470.7 322 73.0
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.3e-130 470.3 372 65.9
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.8e-130 469.9 321 72.6
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.3e-130 469.5 356 65.4
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 3.0e-130 469.2 358 66.5
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 3.9e-130 468.8 328 72.6
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 5.1e-130 468.4 298 76.5
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 6.7e-130 468.0 348 68.7
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 6.7e-130 468.0 321 72.9
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 8.7e-130 467.6 298 75.5
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.5e-129 466.8 297 75.1
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 3.3e-129 465.7 299 75.6
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 3.3e-129 465.7 359 66.6
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 4.3e-129 465.3 315 74.0
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 7.4e-129 464.5 314 72.9
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 7.4e-129 464.5 307 74.3
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 9.6e-129 464.2 318 72.0
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.3e-128 463.8 310 73.9
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.7e-128 462.2 326 70.6
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 6.2e-128 461.5 312 74.0
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 6.2e-128 461.5 363 64.2
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.1e-127 460.7 302 74.2
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.4e-127 459.5 303 72.6
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 3.1e-127 459.1 359 68.0
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 1.5e-126 456.8 318 72.3
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 5.8e-126 454.9 337 68.8
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.1e-124 450.7 313 72.2
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.9e-124 449.9 345 66.4
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 7.1e-124 448.0 362 65.2
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 3.5e-123 445.7 300 73.0
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.0e-122 444.1 376 63.3
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.8e-122 443.4 289 75.1
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 2.3e-122 443.0 306 70.6
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 6.7e-122 441.4 362 64.6
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 4.0e-119 432.2 368 63.3
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 2.6e-118 429.5 306 70.6
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.3e-117 427.2 330 67.6
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 4.3e-113 412.1 310 67.4
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.6e-112 410.2 308 67.5
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.1e-111 407.5 226 83.2
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 3.4e-110 402.5 361 60.1
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 5.9e-110 401.7 340 61.2
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.0e-109 401.0 401 55.6
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.2e-107 394.0 295 70.2
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.1e-107 393.3 298 65.1
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 6.7e-106 388.3 360 58.6
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 8.2e-104 381.3 271 67.2
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.3e-103 378.6 254 70.5
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.6e-99 367.1 381 53.8
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.7e-98 361.7 292 61.6
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.1e-97 360.9 293 62.5
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.3e-96 357.5 229 71.6
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 8.2e-96 354.8 323 59.1
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.7e-88 330.5 246 65.4
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 4.5e-86 322.4 365 52.6
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 2.7e-83 313.2 300 57.3
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 8.0e-83 311.6 283 61.1
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 8.2e-80 301.6 240 66.2
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 8.8e-74 281.6 196 71.9
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 5.4e-71 272.3 214 60.3
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.5e-70 269.6 284 48.2
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.7e-69 267.3 240 60.4
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.2e-62 244.6 200 58.0
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 7.8e-62 241.9 199 56.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 8.6e-61 238.4 190 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.5e-60 237.7 200 56.0
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 5.6e-60 235.7 220 54.5
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.7e-56 224.2 195 55.4
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.8e-55 220.7 359 42.1
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 5.6e-52 209.1 213 49.3
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 2.2e-48 197.2 111 83.8
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.9e-48 196.8 293 43.3
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 3.4e-41 173.3 219 51.6
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.9e-39 167.5 110 70.0
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.4e-39 167.2 160 53.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 5.6e-36 156.0 101 70.3
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 3.1e-34 150.2 197 47.7
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 5.1e-29 132.9 68 86.8
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 1.1e-28 131.7 112 58.9
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 1.1e-23 115.2 115 56.5
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 2.4e-18 97.4 124 47.6
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 5.3e-18 96.3 101 54.5
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 3.4e-17 93.6 65 61.5
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 1.3e-16 91.7 96 54.2
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.0e-13 82.0 50 74.0
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 6.7e-13 79.3 81 49.4
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 8.7e-13 79.0 37 89.2
RcHm_v2.0_Chr4g0397091 Rosa chinensis HOM05D001659 ORTHO05D001659 1.1e-12 78.6 189 29.6
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 6.2e-11 72.8 185 28.6
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 6.9e-10 69.3 190 27.4
Lj4g0002004 Lotus japonicus HOM05D001659 ORTHO05D001659 2.6e-09 67.4 185 30.8
CAN.G1731.2 Capsicum annuum HOM05D001659 ORTHO05D001659 3.4e-09 67.0 177 29.4
Solyc08g005550.4 Solanum lycopersicum HOM05D001659 ORTHO05D001659 7.6e-09 65.9 182 29.1
PGSC0003DMG400018484 Solanum tuberosum HOM05D001659 ORTHO05D001659 7.6e-09 65.9 189 27.5
Sopen08g001570 Solanum pennellii HOM05D001659 ORTHO05D001659 1.3e-08 65.1 183 29.5
arahy.Tifrunner.gnm1.ann1.R33HCR Arachis hypogaea HOM05D001659 ORTHO05D001659 1.7e-08 64.7 147 29.9
THA.LOC104814432 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 1.7e-08 64.7 189 28.0
MSTRG.1764 Avicennia marina HOM05D001659 ORTHO05D001659 8.4e-08 62.4 177 28.8
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 3.2e-07 60.5 71 52.1
Mapoly0016s0007 Marchantia polymorpha HOM05D001659 ORTHO05D001659 2.1e-06 57.8 156 25.0
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.7e-06 57.4 53 56.6
CAN.G107.18 Capsicum annuum HOM05D001659 ORTHO05D001659 6.0e-06 56.2 136 32.4


User provided reference genes

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