Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 1.7e-94 349.4 179 100.0
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 5.8e-87 324.3 179 93.9
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 4.9e-86 321.2 179 93.3
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 3.6e-73 278.5 185 82.2
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 3.4e-71 271.9 187 75.4
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 5.5e-45 184.9 165 60.0
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 7.9e-44 181.0 197 54.3
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 1.4e-43 180.3 148 64.9
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 5.1e-43 178.3 123 72.4
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 8.8e-43 177.6 150 60.7
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 2.8e-41 172.6 184 54.3
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 1.1e-40 170.6 118 71.2
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 1.1e-40 170.6 109 76.1
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 1.8e-40 169.9 139 66.9
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 1.8e-40 169.9 172 54.1
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 4.1e-40 168.7 109 73.4
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 6.9e-40 167.9 141 61.0
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 6.9e-40 167.9 186 48.4
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 9.1e-40 167.5 129 64.3
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 1.2e-39 167.2 141 60.3
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 1.5e-39 166.8 187 50.3
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 2.0e-39 166.4 174 54.0
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 2.0e-39 166.4 145 60.7
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 2.6e-39 166.0 124 66.9
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 4.5e-39 165.2 163 54.6
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 4.5e-39 165.2 195 52.3
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 5.9e-39 164.9 168 57.1
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 7.7e-39 164.5 109 71.6
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 1.0e-38 164.1 167 53.3
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.3e-38 163.7 136 64.0
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.3e-38 163.7 136 64.0
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 1.3e-38 163.7 139 64.7
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 1.7e-38 163.3 165 54.5
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 3.8e-38 162.2 139 64.0
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 6.5e-38 161.4 146 58.9
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 6.5e-38 161.4 98 83.7
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 8.5e-38 161.0 176 55.7
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 2.5e-37 159.5 167 52.1
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 3.2e-37 159.1 109 70.6
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 5.5e-37 158.3 153 56.9
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 9.4e-37 157.5 130 63.8
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 1.2e-36 157.1 132 63.6
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 1.2e-36 157.1 165 52.1
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 1.6e-36 156.8 105 74.3
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 1.6e-36 156.8 113 68.1
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 2.7e-36 156.0 192 48.4
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 4.7e-36 155.2 105 73.3
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 4.7e-36 155.2 134 61.9
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 4.7e-36 155.2 174 48.3
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 7.9e-36 154.5 181 51.4
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 7.9e-36 154.5 109 72.5
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 1.0e-35 154.1 101 72.3
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 1.0e-35 154.1 130 60.0
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 1.4e-35 153.7 123 64.2
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 1.4e-35 153.7 123 64.2
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 1.4e-35 153.7 140 60.0
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 1.4e-35 153.7 140 60.0
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 1.4e-35 153.7 118 63.6
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 1.4e-35 153.7 152 55.3
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 1.8e-35 153.3 123 63.4
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.8e-35 153.3 110 66.4
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 1.8e-35 153.3 109 69.7
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 1.8e-35 153.3 171 50.3
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 2.3e-35 152.9 123 63.4
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 3.0e-35 152.5 99 72.7
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 3.0e-35 152.5 189 47.6
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 3.9e-35 152.1 132 59.8
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 3.9e-35 152.1 117 67.5
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 3.9e-35 152.1 174 51.1
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 5.1e-35 151.8 142 58.5
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 5.1e-35 151.8 142 58.5
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 5.1e-35 151.8 109 65.1
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 5.1e-35 151.8 143 51.7
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 1.5e-34 150.2 111 67.6
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 1.5e-34 150.2 154 51.9
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 2.0e-34 149.8 112 64.3
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 9.7e-34 147.5 95 72.6
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 2.8e-33 146.0 153 51.0
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 3.7e-33 145.6 141 52.5
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 3.7e-33 145.6 109 64.2
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 4.8e-33 145.2 105 63.8
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 4.8e-33 145.2 185 48.1
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 6.3e-33 144.8 178 40.4
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 8.2e-33 144.4 112 64.3
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 8.2e-33 144.4 144 54.2
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 4.1e-32 142.1 95 71.6
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 4.5e-31 138.7 99 69.7
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 5.9e-31 138.3 109 67.0
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 2.1e-28 129.8 112 61.6
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 1.0e-27 127.5 114 57.9
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 6.7e-27 124.8 86 72.1
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 8.8e-27 124.4 99 64.6
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 2.0e-26 123.2 102 58.8
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 7.4e-26 121.3 102 57.8
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 3.1e-24 115.9 126 46.8
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 2.9e-22 109.4 87 63.2
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 1.9e-21 106.7 78 65.4
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 1.6e-20 103.6 82 51.2
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 8.0e-20 101.3 81 61.7
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 1.8e-19 100.1 76 59.2
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 8.8e-19 97.8 107 45.8
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 9.8e-18 94.4 62 71.0
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 2.8e-17 92.8 126 47.6
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-16 90.1 90 47.8
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.4e-08 63.9 44 68.2
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.6e-07 60.5 77 44.2
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 1.7e-06 57.0 38 73.7


User provided reference genes

Program Settings