Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.4e-86 322.8 152 100.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 3.1e-81 305.1 152 94.7
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.9e-80 300.1 150 94.0
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 3.9e-68 261.5 153 81.0
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.1e-65 253.4 149 82.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.7e-55 219.5 150 74.0
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.3e-51 205.3 148 70.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 2.3e-44 182.6 146 60.3
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.7e-42 176.4 146 60.3
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.8e-41 172.9 146 58.9
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.1e-38 163.7 137 55.5
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.7e-37 159.1 151 53.0
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 4.7e-37 158.3 143 56.6
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.4e-36 156.8 140 55.0
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.8e-36 156.4 145 53.8
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 8.8e-36 154.1 148 51.4
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.3e-35 152.1 147 51.0
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.3e-35 152.1 147 51.0
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 7.5e-35 151.0 137 54.7
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 9.7e-35 150.6 144 51.4
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 6.3e-34 147.9 135 55.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.4e-33 146.7 148 52.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.1e-33 145.6 142 51.4
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 4.1e-33 145.2 139 51.8
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 9.1e-33 144.1 145 51.0
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.6e-32 143.3 138 52.2
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.0e-32 142.9 97 69.1
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 4.5e-32 141.7 135 53.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 5.9e-32 141.4 150 52.0
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 7.7e-32 141.0 145 46.9
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.0e-31 140.6 147 51.7
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.2e-31 139.4 152 50.0
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 2.9e-31 139.0 152 50.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 5.0e-31 138.3 150 47.3
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-30 137.1 138 50.0
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.1e-30 137.1 153 47.7
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.1e-30 137.1 154 49.4
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.9e-30 136.3 151 48.3
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.9e-30 136.3 150 47.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 2.5e-30 136.0 153 46.4
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.5e-30 136.0 153 46.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 2.5e-30 136.0 157 48.4
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.2e-30 135.6 151 49.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 4.2e-30 135.2 148 47.3
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 9.4e-30 134.0 140 50.7
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.2e-29 133.7 140 50.0
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.6e-29 133.3 157 46.5
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.6e-29 133.3 137 51.1
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.1e-29 132.9 147 49.7
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.0e-28 130.6 150 49.3
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.4e-28 130.2 153 45.1
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.4e-28 130.2 139 48.2
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.4e-28 130.2 134 48.5
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 5.2e-28 128.3 150 45.3
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.2e-28 128.3 148 46.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.2e-28 128.3 148 46.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 6.8e-28 127.9 150 48.0
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.8e-28 127.9 150 48.0
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 6.8e-28 127.9 136 50.0
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 6.8e-28 127.9 152 42.1
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 8.8e-28 127.5 150 48.0
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 8.8e-28 127.5 152 44.7
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 8.8e-28 127.5 152 44.7
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.2e-27 127.1 134 47.0
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.2e-27 127.1 153 45.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 1.2e-27 127.1 148 45.9
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.5e-27 126.7 133 49.6
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.5e-27 126.7 152 41.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.0e-27 126.3 135 47.4
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.4e-27 125.6 152 42.1
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.4e-27 125.6 148 45.3
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 3.4e-27 125.6 149 45.6
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 5.7e-27 124.8 140 49.3
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 5.7e-27 124.8 155 46.5
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 7.5e-27 124.4 148 48.0
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 7.5e-27 124.4 139 46.8
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 9.8e-27 124.0 147 42.2
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.3e-26 123.6 150 44.0
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.7e-26 123.2 140 47.9
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 2.2e-26 122.9 151 45.7
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 3.7e-26 122.1 152 44.7
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.8e-26 121.7 148 39.9
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 4.8e-26 121.7 150 44.7
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 8.3e-26 120.9 151 46.4
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 8.3e-26 120.9 152 42.8
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.1e-25 120.6 136 47.1
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.4e-25 120.2 138 46.4
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.8e-25 119.8 152 44.1
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.8e-25 119.8 136 44.1
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 2.4e-25 119.4 136 49.3
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 3.1e-25 119.0 138 45.7
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 5.4e-25 118.2 139 46.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.4e-25 118.2 157 45.2
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 7.0e-25 117.9 154 42.2
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-24 117.1 136 41.9
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 2.0e-24 116.3 139 42.4
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.7e-24 115.9 150 41.3
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.7e-24 114.4 135 40.7
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 7.7e-24 114.4 141 46.8
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.0e-23 114.0 136 41.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.0e-23 114.0 136 42.6
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.7e-23 113.2 136 42.6
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-23 113.2 136 41.9
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.7e-23 113.2 141 47.5
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.2e-23 112.8 155 40.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.9e-23 112.5 142 45.1
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-23 112.5 136 41.2
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-23 112.5 136 41.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.9e-23 112.5 146 43.8
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.9e-23 112.5 140 42.9
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 3.8e-23 112.1 136 41.9
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 5.0e-23 111.7 150 46.0
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 6.5e-23 111.3 139 41.0
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 6.5e-23 111.3 153 39.9
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.1e-22 110.5 142 44.4
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.1e-22 110.5 138 42.0
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.5e-22 110.2 157 40.1
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.5e-22 110.2 139 41.0
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-22 110.2 136 41.2
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-22 110.2 136 41.2
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.9e-22 109.8 137 40.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.9e-22 109.8 139 41.0
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.9e-22 109.8 139 41.0
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.9e-22 109.8 137 40.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.9e-22 109.8 130 43.8
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.9e-22 109.8 144 42.4
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-22 109.0 139 41.0
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-22 108.6 139 40.3
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 4.2e-22 108.6 139 40.3
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.5e-22 108.2 139 40.3
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 7.2e-22 107.8 136 40.4
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 9.5e-22 107.5 139 41.0
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.2e-21 107.1 136 41.2
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.2e-21 107.1 155 42.6
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-21 106.7 139 39.6
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-21 106.7 137 40.9
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-21 106.7 136 39.0
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-21 106.3 139 40.3
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.7e-21 105.1 134 44.0
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 6.1e-21 104.8 139 39.6
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.1e-21 104.8 139 39.6
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 8.0e-21 104.4 138 43.5
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 8.0e-21 104.4 152 40.1
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 8.0e-21 104.4 141 45.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.4e-20 103.6 136 39.7
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-20 103.6 139 39.6
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-20 103.6 137 40.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-20 103.6 139 39.6
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-20 103.6 137 40.9
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.8e-20 103.2 136 39.0
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 4.0e-20 102.1 136 38.2
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 4.0e-20 102.1 152 39.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 5.2e-20 101.7 136 37.5
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 5.2e-20 101.7 136 39.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.2e-20 101.7 134 41.8
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.7e-19 98.2 140 36.4
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.5e-19 97.8 136 36.8
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 9.8e-19 97.4 98 49.0
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.2e-18 96.3 140 37.1
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-18 95.9 147 37.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-18 95.1 140 36.4
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.1e-17 94.0 136 36.8
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-17 94.0 143 37.1
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.8e-17 93.2 136 36.8
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.8e-17 93.2 136 36.8
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 4.1e-17 92.0 136 36.0
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 4.1e-17 92.0 136 36.0
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 4.1e-17 92.0 136 36.0
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-17 91.7 136 36.0
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 5.4e-17 91.7 136 36.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.4e-17 91.7 105 45.7
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-16 89.7 136 36.0
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 4.5e-16 88.6 105 41.9
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-15 86.7 126 35.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-15 86.3 90 43.3
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.8e-13 79.3 142 35.2
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 6.1e-13 78.2 79 48.1
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.8e-12 76.6 146 36.3


User provided reference genes

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