Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 7.6e-119 430.6 237 100.0
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 6.7e-107 391.0 237 91.1
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 5.6e-106 387.9 237 91.6
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 8.2e-89 330.9 239 82.8
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.7e-86 323.2 238 80.3
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.7e-84 315.8 240 81.2
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 9.4e-61 237.7 236 61.4
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 8.0e-60 234.6 232 61.6
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.8e-59 233.4 233 61.4
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 4.0e-59 232.3 235 61.3
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 5.2e-59 231.9 199 68.3
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.7e-58 228.4 191 67.0
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 9.8e-58 227.6 210 64.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.3e-57 227.3 212 61.3
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.3e-57 227.3 193 65.8
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 2.2e-57 226.5 192 67.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.4e-56 223.0 195 63.6
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 5.4e-56 221.9 203 64.5
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 9.1e-56 221.1 182 68.7
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.2e-55 220.7 188 65.4
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.0e-55 219.9 194 66.0
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.5e-55 218.8 206 63.1
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 5.9e-55 218.4 214 59.8
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 7.7e-55 218.0 216 60.2
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 7.7e-55 218.0 192 65.1
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.3e-54 217.2 234 53.8
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 3.8e-54 215.7 196 64.8
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 5.0e-54 215.3 186 67.2
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 6.6e-54 214.9 192 64.6
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.9e-53 213.4 197 62.9
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.9e-53 213.4 235 57.4
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.2e-53 212.2 203 62.6
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 7.2e-53 211.5 233 57.5
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 9.5e-53 211.1 281 50.2
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 9.5e-53 211.1 190 61.1
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.2e-52 210.7 202 62.4
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 2.1e-52 209.9 160 75.0
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.8e-52 209.5 194 62.4
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.0e-51 206.1 196 61.7
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 4.0e-51 205.7 204 59.8
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 5.2e-51 205.3 188 58.5
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 8.9e-51 204.5 188 60.1
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 8.9e-51 204.5 222 55.0
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.0e-50 203.4 187 64.7
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 2.6e-50 203.0 188 60.1
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 3.4e-50 202.6 236 54.7
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 4.4e-50 202.2 195 62.6
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.7e-49 200.3 198 58.1
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.8e-49 199.5 210 59.5
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.8e-49 199.5 181 61.9
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.9e-49 198.7 251 47.8
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.8e-48 196.8 188 56.9
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 2.4e-48 196.4 227 51.5
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 3.2e-48 196.1 188 56.9
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 4.1e-48 195.7 198 57.1
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 4.1e-48 195.7 219 54.8
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 5.4e-48 195.3 197 58.4
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 7.0e-48 194.9 236 56.4
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 9.2e-48 194.5 197 58.9
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.6e-47 193.7 211 53.1
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 2.0e-47 193.4 209 55.5
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.0e-47 193.4 211 55.0
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.0e-47 193.4 198 56.6
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 2.0e-47 193.4 212 53.3
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.7e-47 193.0 190 55.8
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 3.5e-47 192.6 210 57.6
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 3.5e-47 192.6 198 56.6
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.3e-46 190.7 186 58.1
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.3e-46 189.9 199 57.8
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 2.9e-46 189.5 198 56.6
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.9e-46 189.5 201 55.2
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.9e-46 189.5 188 55.3
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.9e-45 186.8 229 53.7
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.5e-45 186.4 191 57.1
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 2.5e-45 186.4 188 56.9
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 3.3e-45 186.0 205 52.7
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 3.3e-45 186.0 216 53.7
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 3.1e-43 179.5 224 48.2
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 4.0e-43 179.1 214 48.6
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 5.2e-43 178.7 232 49.1
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 5.8e-42 175.3 145 69.7
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.3e-41 174.1 202 49.5
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 6.4e-41 171.8 216 48.6
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 6.4e-41 171.8 213 52.1
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.1e-40 171.0 211 46.4
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 3.2e-40 169.5 241 44.4
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.2e-39 167.5 236 44.1
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-39 167.5 203 48.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.2e-39 167.5 221 48.0
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.2e-39 167.5 224 49.1
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 3.5e-39 166.0 217 49.3
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.3e-38 163.3 210 47.1
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 5.0e-38 162.2 210 47.1
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 8.6e-38 161.4 229 46.7
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 3.3e-37 159.5 215 47.4
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 7.3e-37 158.3 181 50.8
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 7.3e-37 158.3 232 45.7
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.2e-36 157.5 208 49.5
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 3.6e-36 156.0 231 46.8
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 3.6e-36 156.0 231 46.8
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 8.0e-36 154.8 171 52.0
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.8e-35 153.7 221 46.2
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.3e-35 153.3 222 45.9
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 3.1e-35 152.9 204 46.6
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 6.8e-35 151.8 217 43.3
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 6.8e-35 151.8 197 48.7
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 2.0e-34 150.2 240 43.8
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.0e-34 150.2 125 67.2
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 2.0e-34 150.2 198 48.5
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 2.6e-34 149.8 157 54.8
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 2.6e-34 149.8 223 42.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 7.5e-34 148.3 104 82.7
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 9.8e-34 147.9 208 47.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 6.4e-33 145.2 94 87.2
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.1e-32 144.4 240 43.8
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 3.2e-32 142.9 123 66.7
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 9.2e-32 141.4 273 39.6
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.6e-31 140.6 202 49.0
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 2.7e-31 139.8 239 41.0
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.5e-29 133.3 225 43.1
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 6.2e-28 128.6 241 39.8
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 6.2e-28 128.6 241 39.8
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 6.2e-28 128.6 241 39.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 6.2e-28 128.6 215 42.3
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 6.2e-28 128.6 221 43.4
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 5.2e-27 125.6 134 57.5
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 1.2e-26 124.4 183 45.4
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 9.9e-26 121.3 214 36.9
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 9.9e-26 121.3 224 37.9
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 7.1e-24 115.2 202 39.1
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.2e-23 114.4 192 42.2
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.3e-22 110.9 232 38.8
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 5.6e-21 105.5 105 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.2e-20 104.4 172 35.5
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.2e-18 97.8 105 53.3
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.5e-18 97.4 105 53.3
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 5.8e-18 95.5 110 53.6
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.6e-15 87.4 85 65.9
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.6e-15 87.4 156 39.1
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 3.0e-14 83.2 106 49.1
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.1e-13 81.3 200 29.5
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 2.5e-13 80.1 95 46.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.6e-12 77.4 81 56.8
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 2.1e-12 77.0 114 45.6
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.6e-10 70.1 48 70.8
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 4.9e-09 65.9 56 58.9
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.9e-09 65.9 77 45.5
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.2e-07 61.2 115 33.0
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.7e-06 57.4 84 38.1
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.9e-06 56.2 115 33.0


User provided reference genes

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