Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013148 Solanum tuberosum HOM05D001277 ORTHO05D000950 2.7e-53 211.8 116 100.0
Sopen10g004130 Solanum pennellii HOM05D001277 ORTHO05D000950 4.8e-50 201.1 115 94.8
Solyc10g008270.3 Solanum lycopersicum HOM05D001277 ORTHO05D000950 6.3e-50 200.7 115 94.8
CAN.G578.9 Capsicum annuum HOM05D001277 ORTHO05D000950 1.6e-45 186.0 115 80.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 9.7e-43 176.8 115 79.1
Solyc10g008260.2 Solanum lycopersicum HOM05D001277 ORTHO05D000950 2.8e-42 175.3 113 79.6
CAN.G578.14 Capsicum annuum HOM05D001277 ORTHO05D000950 1.7e-39 166.0 116 75.0
PGSC0003DMG400039921 Solanum tuberosum HOM05D001277 ORTHO05D000950 6.7e-36 154.1 115 69.6
CAN.G1509.8 Capsicum annuum HOM05D001277 ORTHO05D000950 3.7e-34 148.3 116 66.4
Solyc10g008263.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 5.5e-30 134.4 115 62.6
Solyc10g008247.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 2.1e-29 132.5 119 59.7
Peaxi162Scf00059g01717 Petunia axillaris HOM05D001277 ORTHO05D000950 7.4e-27 124.0 115 53.0
Sopen10g004110 Solanum pennellii HOM05D001277 ORTHO05D000950 1.4e-25 119.8 117 56.4
Nitab4.5_0006305g0020 Nicotiana tabacum HOM05D001277 ORTHO05D000950 2.2e-23 112.5 117 52.1
Peaxi162Scf00008g00815 Petunia axillaris HOM05D001277 ORTHO05D000950 6.5e-23 110.9 115 49.6
Solyc10g008243.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 4.0e-20 101.7 92 59.8
Sopen12g005610 Solanum pennellii HOM05D001277 ORTHO05D000950 3.7e-18 95.1 117 44.4
CAN.G1600.2 Capsicum annuum HOM05D001277 ORTHO05D000950 2.4e-17 92.4 116 43.1
Oeu017501.1 Olea europaea HOM05D001277 ORTHO05D000950 7.7e-16 87.4 114 43.9
Oeu030708.1 Olea europaea HOM05D001277 ORTHO05D000950 1.3e-15 86.7 113 39.8
Oeu017500.1 Olea europaea HOM05D001277 ORTHO05D000950 1.7e-15 86.3 113 43.4
Solyc12g010595.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 1.7e-15 86.3 117 41.9
Nitab4.5_0025245g0010 Nicotiana tabacum HOM05D001277 ORTHO05D000950 2.2e-15 85.9 95 51.6
Dinv08385 Davidia involucrata HOM05D001277 ORTHO05D000950 2.5e-14 82.4 111 42.3
Dinv08386 Davidia involucrata HOM05D001277 ORTHO05D004973 5.5e-14 81.3 111 42.3
PGSC0003DMG400007814 Solanum tuberosum HOM05D001277 ORTHO05D000950 5.5e-14 81.3 63 61.9
Cc05_g07320 Coffea canephora HOM05D001277 ORTHO05D000950 7.2e-14 80.9 112 42.0
Dinv00852 Davidia involucrata HOM05D001277 ORTHO05D000950 3.6e-13 78.6 113 39.8
SalBow7G1009 Salvia bowleyana HOM05D001277 ORTHO05D000950 2.3e-12 75.9 114 36.8
Oeu017496.1 Olea europaea HOM05D001277 ORTHO05D000950 3.0e-12 75.5 108 38.9
DCAR_021251 Daucus carota HOM05D001277 ORTHO05D000950 5.2e-12 74.7 114 37.7
Hma1.2p1_0002F.1_g001990 Hydrangea macrophylla HOM05D001277 ORTHO05D000950 6.8e-12 74.3 111 35.1
Rhsim06G0141200 Rhododendron simsii HOM05D001277 ORTHO05D000950 1.2e-11 73.6 109 41.3
Solyc12g010585.1 Solanum lycopersicum HOM05D001277 ORTHO05D000950 1.5e-11 73.2 61 55.7
MSTRG.6796 Avicennia marina HOM05D001277 ORTHO05D000950 2.0e-11 72.8 109 37.6
Migut.M00292 Erythranthe guttata HOM05D001277 ORTHO05D000950 2.0e-11 72.8 109 41.3
Potri.013G129800 Populus trichocarpa HOM05D001277 ORTHO05D000950 3.4e-11 72.0 110 37.3
Actinidia11082 Actinidia chinensis HOM05D001277 ORTHO05D000950 4.4e-11 71.6 109 37.6
FAN09G2322 Fragaria x ananassa HOM05D001277 ORTHO05D000950 9.8e-11 70.5 111 35.1
Atru.chr6.2982 Acer truncatum HOM05D001277 ORTHO05D000950 2.2e-10 69.3 111 31.5
Cc05_g07290 Coffea canephora HOM05D001277 ORTHO05D000950 2.8e-10 68.9 112 33.9
Gohir.D10G027100 Gossypium hirsutum HOM05D001277 ORTHO05D000950 2.8e-10 68.9 113 31.9
Gorai.011G028400 Gossypium raimondii HOM05D001277 ORTHO05D000950 2.8e-10 68.9 113 31.9
Cfa014626 Carpinus fangiana HOM05D001277 ORTHO05D000950 3.7e-10 68.6 114 36.8
GSVIVG01020561001 Vitis vinifera HOM05D001277 ORTHO05D000950 3.7e-10 68.6 110 35.5
Gohir.A10G026500 Gossypium hirsutum HOM05D001277 ORTHO05D000950 4.8e-10 68.2 113 31.0
QL08p039190 Quercus lobata HOM05D001277 ORTHO05D000950 6.3e-10 67.8 111 33.3
RcHm_v2.0_Chr2g0126861 Rosa chinensis HOM05D001277 ORTHO05D000950 6.3e-10 67.8 113 37.2
Duzib192G0366 Durio zibethinus HOM05D001277 ORTHO05D000950 1.1e-09 67.0 112 33.9
CSS0033518 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 1.4e-09 66.6 114 37.7
CSS0044106 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 1.4e-09 66.6 114 37.7
Rhsim02G0131400 Rhododendron simsii HOM05D001277 ORTHO05D000950 1.4e-09 66.6 113 36.3
Sed0024653 Sechium edule HOM05D001277 ORTHO05D000950 1.4e-09 66.6 111 33.3
CiPaw.03G178400 Carya illinoinensis HOM05D001277 ORTHO05D000950 1.8e-09 66.2 111 35.1
Haze_13181 Corylus avellana HOM05D001277 ORTHO05D000950 1.8e-09 66.2 111 33.3
Prupe.3G131500 Prunus persica HOM05D001277 ORTHO05D000950 1.8e-09 66.2 110 36.4
Sabra11G0037200 Salix brachista HOM05D001277 ORTHO05D000950 2.4e-09 65.9 112 34.8
Actinidia11081 Actinidia chinensis HOM05D001277 ORTHO05D000950 3.1e-09 65.5 103 37.9
Eucgr.D00616 Eucalyptus grandis HOM05D001277 ORTHO05D000950 3.1e-09 65.5 100 34.0
Sabra19G0110300 Salix brachista HOM05D001277 ORTHO05D000950 3.1e-09 65.5 110 32.7
FvH4_6g26360 Fragaria vesca HOM05D001277 ORTHO05D000950 4.1e-09 65.1 114 32.5
Duzib235G1150 Durio zibethinus HOM05D001277 ORTHO05D000950 5.4e-09 64.7 112 32.1
CANSAT64G1763 Cannabis sativa HOM05D001277 ORTHO05D000950 7.0e-09 64.3 115 31.3
Ciclev10016466m.g Citrus clementina HOM05D001277 ORTHO05D000950 7.0e-09 64.3 114 27.2
Potri.019G099300 Populus trichocarpa HOM05D001277 ORTHO05D000950 7.0e-09 64.3 109 33.9
Potri.019G099500 Populus trichocarpa HOM05D001277 ORTHO05D000950 7.0e-09 64.3 109 33.9
vmacro15915 Vaccinium macrocarpon HOM05D001277 ORTHO05D000950 7.0e-09 64.3 114 34.2
Ciclev10016846m.g Citrus clementina HOM05D001277 ORTHO05D000950 9.1e-09 63.9 115 36.5
Manes.16G028800 Manihot esculenta HOM05D001277 ORTHO05D000950 9.1e-09 63.9 101 33.7
TWI59G0794 Tripterygium wilfordii HOM05D001277 ORTHO05D000950 9.1e-09 63.9 111 31.5
Glyma.13G238300 Glycine max HOM05D001277 ORTHO05D000950 1.2e-08 63.5 109 33.0
Hma1.2p1_0208F.1_g088180 Hydrangea macrophylla HOM05D001277 ORTHO05D000950 1.2e-08 63.5 99 36.4
Psat1g204520 Pisum sativum HOM05D001277 ORTHO05D000950 1.2e-08 63.5 116 32.8
CSS0045340 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 1.6e-08 63.2 109 36.7
Cc05_g07300 Coffea canephora HOM05D001277 ORTHO05D000950 1.6e-08 63.2 111 31.5
MD05G1338200 Malus domestica HOM05D001277 ORTHO05D000950 1.6e-08 63.2 112 33.0
CiPaw.04G127400 Carya illinoinensis HOM05D001277 ORTHO05D000950 2.0e-08 62.8 111 31.5
Manes.12G088914 Manihot esculenta HOM05D001277 ORTHO05D000950 2.0e-08 62.8 111 30.6
Manes.12G088952 Manihot esculenta HOM05D001277 ORTHO05D000950 2.0e-08 62.8 111 30.6
TAR629G1074 Trochodendron aralioides HOM05D001277 ORTHO05D000950 2.0e-08 62.8 111 33.3
GSVIVG01002788001 Vitis vinifera HOM05D001277 ORTHO05D000950 2.7e-08 62.4 111 33.3
GSVIVG01007117001 Vitis vinifera HOM05D001277 ORTHO05D000950 2.7e-08 62.4 111 33.3
CSS0006604 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 3.5e-08 62.0 111 35.1
FAN05G0233 Fragaria x ananassa HOM05D001277 ORTHO05D000950 3.5e-08 62.0 111 32.4
Medtr2g013920 Medicago truncatula HOM05D001277 ORTHO05D000950 3.5e-08 62.0 111 32.4
Cfa000483 Carpinus fangiana HOM05D001277 ORTHO05D000950 4.5e-08 61.6 112 34.8
DCAR_024901 Daucus carota HOM05D001277 ORTHO05D000950 4.5e-08 61.6 113 32.7
Dinv17320 Davidia involucrata HOM05D001277 ORTHO05D000950 4.5e-08 61.6 111 34.2
Sabra13G0107700 Salix brachista HOM05D001277 ORTHO05D000950 4.5e-08 61.6 111 31.5
arahy.Tifrunner.gnm1.ann1.CWTI60 Arachis hypogaea HOM05D001277 ORTHO05D000950 5.9e-08 61.2 115 34.8
Duzib160G0013 Durio zibethinus HOM05D001277 ORTHO05D000950 5.9e-08 61.2 112 32.1
VMungo1127G0585 Vigna mungo HOM05D001277 ORTHO05D000950 5.9e-08 61.2 115 27.8
Cc05_g07310 Coffea canephora HOM05D001277 ORTHO05D000950 7.7e-08 60.8 112 32.1
TPR.G16512 Trifolium pratense HOM05D001277 ORTHO05D000950 7.7e-08 60.8 111 33.3
Lj6g0002586 Lotus japonicus HOM05D001277 ORTHO05D000950 1.0e-07 60.5 111 35.1
Medtr2g090500 Medicago truncatula HOM05D001277 ORTHO05D000950 1.0e-07 60.5 111 32.4
CSS0009069 Camellia sinensis var. sinensis HOM05D001277 ORTHO05D000950 1.3e-07 60.1 116 33.6
Haze_06433 Corylus avellana HOM05D001277 ORTHO05D000950 1.3e-07 60.1 112 32.1
Medtr2g090480 Medicago truncatula HOM05D001277 ORTHO05D000950 1.3e-07 60.1 111 28.8
FAN25G3660 Fragaria x ananassa HOM05D001277 ORTHO05D000950 1.7e-07 59.7 110 34.5
Potri.004G044400 Populus trichocarpa HOM05D001277 ORTHO05D000950 1.7e-07 59.7 111 30.6
Potri.011G053400 Populus trichocarpa HOM05D001277 ORTHO05D000950 1.7e-07 59.7 111 30.6
QL05p040966 Quercus lobata HOM05D001277 ORTHO05D000950 1.7e-07 59.7 110 32.7
Manes.13G145600 Manihot esculenta HOM05D001277 ORTHO05D000950 2.3e-07 59.3 111 31.5
Medtr2g090440 Medicago truncatula HOM05D001277 ORTHO05D000950 2.3e-07 59.3 111 34.2
Phvul.011G119500 Phaseolus vulgaris HOM05D001277 ORTHO05D000950 2.3e-07 59.3 115 33.0
arahy.Tifrunner.gnm1.ann1.B833GN Arachis hypogaea HOM05D001277 ORTHO05D000950 2.9e-07 58.9 116 35.3
ClCG07G002820 Citrullus lanatus HOM05D001277 ORTHO05D000950 2.9e-07 58.9 111 27.9
MELO3C018728.2 Cucumis melo HOM05D001277 ORTHO05D000950 2.9e-07 58.9 111 27.9
Dinv40569 Davidia involucrata HOM05D001277 ORTHO05D000950 2.9e-07 58.9 111 32.4
FAN11G1827 Fragaria x ananassa HOM05D001277 ORTHO05D000950 2.9e-07 58.9 110 34.5
Glyma.06G291900 Glycine max HOM05D001277 ORTHO05D000950 2.9e-07 58.9 116 30.2
arahy.Tifrunner.gnm1.ann1.ZXK4R3 Arachis hypogaea HOM05D001277 ORTHO05D000950 3.8e-07 58.5 114 30.7
Cpa.g.sc27.35 Carica papaya HOM05D001277 ORTHO05D000950 5.0e-07 58.2 106 30.2
Psat5g272560 Pisum sativum HOM05D001277 ORTHO05D000950 5.0e-07 58.2 111 28.8
arahy.Tifrunner.gnm1.ann1.CV46MP Arachis hypogaea HOM05D001277 ORTHO05D000950 8.6e-07 57.4 111 35.1
CsaV3_7G004510 Cucumis sativus L. HOM05D001277 ORTHO05D000950 8.6e-07 57.4 111 28.8
FvH4_3g09050 Fragaria vesca HOM05D001277 ORTHO05D000950 8.6e-07 57.4 110 33.6
Lj3g0021093 Lotus japonicus HOM05D001277 ORTHO05D000950 8.6e-07 57.4 109 25.7
Lj5g0009473 Lotus japonicus HOM05D001277 ORTHO05D000950 8.6e-07 57.4 109 27.5
Glyma.15G075000 Glycine max HOM05D001277 ORTHO05D000950 1.1e-06 57.0 101 33.7
Lsat_1_v5_gn_3_37760 Lactuca sativa HOM05D001277 ORTHO05D000950 1.1e-06 57.0 110 29.1
Psat5g272400 Pisum sativum HOM05D001277 ORTHO05D000950 1.1e-06 57.0 111 28.8
VMungo0540G1089 Vigna mungo HOM05D001277 ORTHO05D000950 1.1e-06 57.0 111 29.7
VMungo1080G0435 Vigna mungo HOM05D001277 ORTHO05D000950 1.1e-06 57.0 111 28.8
arahy.Tifrunner.gnm1.ann1.Y49D7R Arachis hypogaea HOM05D001277 ORTHO05D000950 1.5e-06 56.6 113 30.1
Eucgr.K01039 Eucalyptus grandis HOM05D001277 ORTHO05D000950 1.5e-06 56.6 117 30.8
Medtr2g090425 Medicago truncatula HOM05D001277 ORTHO05D000950 1.5e-06 56.6 107 27.1
Psat5g272520 Pisum sativum HOM05D001277 ORTHO05D000950 1.5e-06 56.6 111 28.8
Phvul.005G102800 Phaseolus vulgaris HOM05D001277 ORTHO05D000950 1.9e-06 56.2 109 27.5
Solyc02g078130.3 Solanum lycopersicum HOM05D001277 ORTHO05D000950 1.9e-06 56.2 116 28.4
Thecc.02G181300 Theobroma cacao HOM05D001277 ORTHO05D000950 1.9e-06 56.2 111 27.0
Thecc.06G186100 Theobroma cacao HOM05D001277 ORTHO05D000950 1.9e-06 56.2 112 30.4
Actinidia01875 Actinidia chinensis HOM05D001277 ORTHO05D000950 2.5e-06 55.8 111 29.7
Glyma.12G114300 Glycine max HOM05D001277 ORTHO05D000950 2.5e-06 55.8 115 27.8
Gohir.D06G132200 Gossypium hirsutum HOM05D001277 ORTHO05D000950 2.5e-06 55.8 107 29.9
Gorai.010G154100 Gossypium raimondii HOM05D001277 ORTHO05D000950 2.5e-06 55.8 107 29.9
RcHm_v2.0_Chr5g0008601 Rosa chinensis HOM05D001277 ORTHO05D000950 2.5e-06 55.8 113 31.9
COL.COLO4_36348 Corchorus olitorius HOM05D001277 ORTHO05D000950 3.3e-06 55.5 113 27.4
FAN16G0938 Fragaria x ananassa HOM05D001277 ORTHO05D000950 3.3e-06 55.5 110 34.5
Nn1g04113 Nelumbo nucifera HOM05D001277 ORTHO05D000950 3.3e-06 55.5 114 34.2
Peaxi162Scf01057g00002 Petunia axillaris HOM05D001277 ORTHO05D000950 3.3e-06 55.5 113 31.9
Phvul.006G184600 Phaseolus vulgaris HOM05D001277 ORTHO05D000950 3.3e-06 55.5 105 35.2
Prupe.4G048500 Prunus persica HOM05D001277 ORTHO05D000950 3.3e-06 55.5 114 33.3
Lalb_Chr15g0089791 Lupinus albus HOM05D001277 ORTHO05D000950 4.2e-06 55.1 110 33.6
Potri.019G034700 Populus trichocarpa HOM05D001277 ORTHO05D000950 4.2e-06 55.1 109 31.2
ECA246G0285 Erigeron canadensis HOM05D001277 ORTHO05D000950 5.5e-06 54.7 112 32.1
FAN21G1519 Fragaria x ananassa HOM05D001277 ORTHO05D000950 5.5e-06 54.7 98 35.7
THA.LOC104812938 Tarenaya hassleriana HOM05D001277 ORTHO05D000950 5.5e-06 54.7 101 33.7
TPR.G6429 Trifolium pratense HOM05D001277 ORTHO05D000950 5.5e-06 54.7 109 27.5
CiPaw.10G049700 Carya illinoinensis HOM05D001277 ORTHO05D000950 7.2e-06 54.3 101 32.7
AUR62014829 Chenopodium quinoa HOM05D001277 ORTHO05D000950 7.2e-06 54.3 109 32.1
CsaV3_6G012850 Cucumis sativus L. HOM05D001277 ORTHO05D000950 7.2e-06 54.3 116 30.2
Duzib052G0158 Durio zibethinus HOM05D001277 ORTHO05D000950 7.2e-06 54.3 111 30.6
Nitab4.5_0015542g0010 Nicotiana tabacum HOM05D001277 ORTHO05D000950 7.2e-06 54.3 101 30.7
MBI07_g30190_MAGBIO Magnolia biondii HOM05D001277 ORTHO05D000950 9.5e-06 53.9 113 32.7


User provided reference genes

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