Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 1.0e-81 306.6 150 100.0
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 2.0e-72 275.8 150 90.0
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 1.2e-69 266.5 150 87.3
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 3.6e-66 255.0 144 86.1
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 5.4e-62 241.1 145 78.6
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 2.2e-55 219.2 148 68.9
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 4.9e-55 218.0 148 70.3
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 1.1e-54 216.9 148 69.6
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 9.2e-54 213.8 148 62.8
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 2.7e-53 212.2 148 63.5
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 3.5e-53 211.8 152 71.7
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 4.6e-53 211.5 148 66.9
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 4.6e-53 211.5 148 64.9
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 4.6e-53 211.5 148 62.2
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 3.9e-52 208.4 148 66.9
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 5.1e-52 208.0 148 61.5
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 6.6e-52 207.6 148 64.9
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 1.9e-51 206.1 148 62.8
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 2.5e-51 205.7 144 65.3
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 3.3e-51 205.3 148 66.2
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 9.6e-51 203.8 149 63.1
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 1.2e-50 203.4 148 64.2
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 1.2e-50 203.4 145 64.8
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 2.8e-50 202.2 148 64.2
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 3.6e-50 201.8 149 63.1
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 3.6e-50 201.8 149 62.4
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 4.7e-50 201.4 148 62.8
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 8.1e-50 200.7 148 63.5
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 2.4e-49 199.1 149 62.4
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 7.6e-48 194.1 146 64.4
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 2.2e-47 192.6 148 59.5
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 4.9e-47 191.4 137 65.0
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 1.4e-46 189.9 146 63.0
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 9.3e-46 187.2 148 57.4
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 8.7e-44 180.6 143 57.3
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 2.5e-43 179.1 144 60.4
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 1.5e-40 169.9 143 60.1
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 2.1e-37 159.5 147 49.7
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 6.7e-36 154.5 115 62.6
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 7.4e-35 151.0 101 70.3
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 8.7e-28 127.5 91 67.0
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 6.7e-12 74.7 129 33.3
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 6.7e-12 74.7 129 33.3
Pp3c11_13210 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.3e-11 72.4 138 31.2
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 3.3e-11 72.4 141 32.6
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 2.8e-10 69.3 139 32.4
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 2.8e-10 69.3 138 32.6
HPP92_015289 Vanilla planifolia HOM05D000197 ORTHO05D000114 2.8e-10 69.3 125 32.8
HPP92_010019 Vanilla planifolia HOM05D000197 ORTHO05D000114 3.7e-10 68.9 125 32.8
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 4.8e-10 68.6 118 30.5
Hund23047 Selenicereus undatus HOM05D000197 ORTHO05D000114 6.3e-10 68.2 144 31.9
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 1.1e-09 67.4 146 30.8
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 1.1e-09 67.4 131 31.3
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.1e-09 67.4 132 29.5
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 1.4e-09 67.0 138 31.9
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 1.8e-09 66.6 136 31.6
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 1.8e-09 66.6 150 29.3
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 2.4e-09 66.2 131 32.8
Migut.L01436 Erythranthe guttata HOM05D000197 ORTHO05D000114 2.4e-09 66.2 133 31.6
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 2.4e-09 66.2 138 33.3
Ciclev10032973m.g Citrus clementina HOM05D000197 ORTHO05D000114 3.1e-09 65.9 146 32.2
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 3.1e-09 65.9 139 30.2
Lj2g0009876 Lotus japonicus HOM05D000197 ORTHO05D000114 4.1e-09 65.5 146 33.6
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 6.9e-09 64.7 136 29.4
Mapoly0131s0013 Marchantia polymorpha HOM05D008409 ORTHO05D010483 6.9e-09 64.7 135 31.1
AUR62042280 Chenopodium quinoa HOM05D000197 ORTHO05D000114 9.1e-09 64.3 142 26.8
AUR62043141 Chenopodium quinoa HOM05D000197 ORTHO05D000114 9.1e-09 64.3 142 26.8
AUR62043142 Chenopodium quinoa HOM05D000197 ORTHO05D000114 9.1e-09 64.3 142 26.8
Lalb_Chr16g0382431 Lupinus albus HOM05D000197 ORTHO05D000114 9.1e-09 64.3 144 34.0
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 1.2e-08 63.9 131 30.5
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-08 63.9 138 31.2
THA.LOC104809169 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 2.0e-08 63.2 131 24.4
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 2.6e-08 62.8 138 30.4
Hma1.2p1_1017F.1_g248290 Hydrangea macrophylla HOM05D000197 ORTHO05D000114 2.6e-08 62.8 132 31.1
TPR.G25548 Trifolium pratense HOM05D000197 ORTHO05D000114 2.6e-08 62.8 146 30.1
Mapoly0100s0057 Marchantia polymorpha HOM05D008409 ORTHO05D010483 3.4e-08 62.4 140 30.0
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.4e-08 62.4 137 27.7
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.4e-08 62.4 137 27.7
TWI36G1572 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 4.5e-08 62.0 129 31.0
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 5.9e-08 61.6 133 30.1
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 5.9e-08 61.6 136 27.9
AT1G23120 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 7.7e-08 61.2 124 27.4
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 7.7e-08 61.2 140 31.4
FAN07G2092 Fragaria x ananassa HOM05D000197 ORTHO05D000114 7.7e-08 61.2 138 30.4
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 7.7e-08 61.2 129 28.7
arahy.Tifrunner.gnm1.ann1.M7WURA Arachis hypogaea HOM05D000197 ORTHO05D000114 1.0e-07 60.8 142 29.6
Dinv31005 Davidia involucrata HOM05D000197 ORTHO05D000114 1.7e-07 60.1 132 31.1
Dinv31097 Davidia involucrata HOM05D000197 ORTHO05D000114 1.7e-07 60.1 132 31.1
Thhalv10009023m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 1.7e-07 60.1 67 37.3
FvH4_4g34890 Fragaria vesca HOM05D000197 ORTHO05D000114 1.7e-07 60.1 138 29.7
FAN12G1601 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.7e-07 60.1 138 29.7
FAN17G2379 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.7e-07 60.1 138 29.7
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 1.7e-07 60.1 140 25.7
Carub.0001s2264 Capsella rubella HOM05D000197 ORTHO05D000114 2.2e-07 59.7 67 35.8
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 2.2e-07 59.7 147 29.3
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 2.2e-07 59.7 132 29.5
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 2.9e-07 59.3 132 29.5
AL1G36690 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 3.8e-07 58.9 67 35.8
Haze_10961 Corylus avellana HOM05D000197 ORTHO05D000114 5.0e-07 58.5 125 32.0
THA.LOC104822191 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 6.5e-07 58.2 110 35.5
Aa31LG7G7110 Aethionema arabicum HOM05D000197 ORTHO05D000114 8.5e-07 57.8 63 41.3
QL03p062127 Quercus lobata HOM05D000197 ORTHO05D000114 8.5e-07 57.8 141 30.5
TWI75G0119 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 8.5e-07 57.8 124 29.0
Ah.09g231100 Amaranthus hybridus HOM05D000197 ORTHO05D000114 1.1e-06 57.4 146 28.1
Peaxi162Scf00815g00012 Petunia axillaris HOM05D000197 ORTHO05D000114 1.1e-06 57.4 153 22.9
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 1.1e-06 57.4 129 27.9
Sp1g20560 Schrenkiella parvula HOM05D000197 ORTHO05D000114 1.1e-06 57.4 67 35.8
MSTRG.2156 Avicennia marina HOM05D000197 ORTHO05D000114 1.9e-06 56.6 141 25.5
COL.COLO4_13135 Corchorus olitorius HOM05D000197 ORTHO05D000114 1.9e-06 56.6 131 26.0
Manes.15G130000 Manihot esculenta HOM05D000197 ORTHO05D000114 1.9e-06 56.6 152 28.3
Cc11_g14370 Coffea canephora HOM05D000197 ORTHO05D000114 2.5e-06 56.2 138 29.7
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 3.2e-06 55.8 147 29.3
Dinv18606 Davidia involucrata HOM05D000197 ORTHO05D000114 7.2e-06 54.7 120 30.8
Dinv18608 Davidia involucrata HOM05D000197 ORTHO05D000114 7.2e-06 54.7 136 26.5
Dinv26222 Davidia involucrata HOM05D000197 ORTHO05D000114 7.2e-06 54.7 120 30.8
Dinv26224 Davidia involucrata HOM05D000197 ORTHO05D000114 7.2e-06 54.7 136 26.5
GSVIVG01011726001 Vitis vinifera HOM05D000197 ORTHO05D000114 9.4e-06 54.3 80 35.0


User provided reference genes

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