Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 4.4e-59 231.1 119 100.0
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 2.4e-52 208.8 118 89.8
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 5.8e-51 204.1 118 89.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.7e-50 202.6 118 88.1
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 2.0e-43 179.1 118 79.7
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.0e-39 165.2 121 74.4
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.5e-38 162.2 119 73.1
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 7.1e-33 144.1 110 65.5
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 7.9e-32 140.6 119 61.3
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.3e-31 139.8 119 63.0
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 2.5e-30 135.6 113 62.8
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 3.3e-30 135.2 118 58.5
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 3.3e-30 135.2 113 62.8
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.3e-29 133.3 118 55.9
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 2.1e-29 132.5 121 59.5
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 6.2e-29 131.0 111 57.7
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 8.2e-29 130.6 112 58.9
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 8.2e-29 130.6 110 62.7
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.1e-28 130.2 112 62.5
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 2.4e-28 129.0 120 55.8
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 5.3e-28 127.9 108 63.0
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 6.9e-28 127.5 119 55.5
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.2e-27 126.7 119 53.8
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.2e-27 126.7 111 59.5
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.5e-27 126.3 116 60.3
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.5e-27 126.3 118 57.6
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 2.0e-27 125.9 122 56.6
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 2.6e-27 125.6 113 58.4
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 2.6e-27 125.6 120 55.0
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 4.5e-27 124.8 119 52.9
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 4.5e-27 124.8 117 54.7
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 5.8e-27 124.4 112 57.1
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 5.8e-27 124.4 109 59.6
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.3e-26 123.2 112 55.4
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.7e-26 122.9 110 60.0
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.2e-26 122.5 112 57.1
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.2e-26 122.5 112 57.1
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 3.8e-26 121.7 114 58.8
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 3.8e-26 121.7 105 61.0
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 8.4e-26 120.6 111 56.8
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.4e-25 119.8 110 57.3
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 2.5e-25 119.0 114 52.6
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 3.2e-25 118.6 113 54.9
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.2e-24 116.7 114 51.8
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 2.1e-24 115.9 113 54.9
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 2.1e-24 115.9 119 51.3
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.1e-24 115.9 112 54.5
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 3.5e-24 115.2 115 53.9
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 3.5e-24 115.2 118 53.4
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 6.1e-24 114.4 113 54.9
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 7.9e-24 114.0 110 51.8
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.0e-23 113.6 112 51.8
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.0e-23 113.6 111 56.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 3.0e-23 112.1 112 53.6
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 1.1e-22 110.2 111 54.1
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.5e-22 109.8 111 54.1
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.5e-22 109.8 112 52.7
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 5.7e-22 107.8 111 53.2
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 9.7e-22 107.1 111 54.1
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 1.3e-21 106.7 96 56.2
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.6e-21 106.3 111 52.3
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 2.2e-21 105.9 119 46.2
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 2.8e-21 105.5 111 52.3
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.8e-21 105.5 111 53.2
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 3.7e-21 105.1 118 48.3
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 1.4e-20 103.2 118 47.5
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.0e-19 99.4 70 68.6
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.7e-18 96.3 64 71.9
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.7e-18 96.3 64 71.9
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.7e-18 96.3 64 71.9
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.2e-18 95.9 84 57.1
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.9e-18 95.5 84 57.1
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.9e-18 95.5 84 57.1
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 2.9e-18 95.5 70 64.3
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 6.5e-18 94.4 138 43.5
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 8.5e-18 94.0 109 45.0
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.4e-17 93.2 64 70.3
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.2e-17 91.7 64 68.8
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.6e-16 88.2 64 67.2
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 1.8e-15 86.3 74 59.5
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 5.1e-15 84.7 55 70.9
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 8.8e-15 84.0 75 58.7
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 4.8e-13 78.2 57 64.9
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 5.5e-09 64.7 130 37.7
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.1e-08 61.2 52 51.9
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 3.0e-07 58.9 108 34.3
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 2.0e-06 56.2 41 65.9


User provided reference genes

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