Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.6e-131 471.9 242 100.0
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 2.9e-125 452.2 242 95.0
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 4.0e-98 362.1 200 94.0
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.4e-97 359.0 183 100.0
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 4.2e-87 325.5 183 88.0
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 3.1e-82 309.3 186 82.3
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 7.1e-79 298.1 238 66.0
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.6e-78 297.0 208 74.0
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 1.7e-77 293.5 218 66.5
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.7e-77 293.5 220 69.5
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 8.7e-77 291.2 233 64.8
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.5e-76 289.7 211 71.1
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.3e-76 289.3 211 70.6
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 9.6e-76 287.7 213 68.5
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 2.8e-75 286.2 205 71.2
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.8e-74 283.5 213 68.1
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 9.0e-74 281.2 217 67.3
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 2.6e-73 279.6 238 61.8
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.7e-72 276.9 212 67.0
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.7e-72 276.9 225 66.2
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 4.9e-72 275.4 221 63.8
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.1e-71 274.2 241 61.8
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.9e-71 273.5 223 63.7
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 3.2e-71 272.7 227 63.4
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 4.2e-71 272.3 233 61.4
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 2.7e-70 269.6 225 62.7
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 7.9e-70 268.1 229 63.3
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.0e-69 267.7 210 64.8
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.0e-69 267.7 246 58.1
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 1.8e-69 266.9 233 60.1
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 3.0e-69 266.2 216 62.5
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 6.7e-69 265.0 202 65.8
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.1e-68 264.2 232 58.2
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.1e-68 264.2 200 66.0
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 1.5e-68 263.8 238 60.5
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.5e-68 263.1 202 64.9
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 3.3e-68 262.7 207 63.8
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 4.3e-68 262.3 233 57.9
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 5.6e-68 261.9 205 62.9
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 7.4e-68 261.5 204 64.7
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.3e-67 260.8 236 58.1
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.6e-67 260.4 203 67.5
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.6e-67 260.4 202 64.4
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 2.1e-67 260.0 238 59.7
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 2.8e-67 259.6 220 60.5
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 2.8e-67 259.6 247 57.9
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 8.1e-67 258.1 238 57.1
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 8.1e-67 258.1 237 58.6
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 1.1e-66 257.7 220 59.5
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 1.1e-66 257.7 199 66.3
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.4e-66 257.3 202 63.9
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.8e-66 256.9 220 60.0
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.8e-66 256.9 202 64.4
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 2.4e-66 256.5 220 60.0
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 2.4e-66 256.5 220 60.0
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 2.4e-66 256.5 203 64.0
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 4.0e-66 255.8 219 60.3
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 2.0e-65 253.4 219 60.3
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 4.5e-65 252.3 196 64.3
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 4.5e-65 252.3 181 69.6
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 7.6e-65 251.5 214 60.3
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 2.2e-64 250.0 212 59.0
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.9e-64 249.6 214 59.8
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.9e-64 249.6 191 64.9
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 4.9e-64 248.8 204 63.7
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 6.5e-64 248.4 196 63.8
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.9e-63 246.9 211 59.7
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.9e-63 246.9 215 58.1
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 9.3e-63 244.6 232 56.0
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 1.6e-62 243.8 208 58.7
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 2.1e-62 243.4 218 59.6
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 2.7e-62 243.0 211 58.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.7e-62 243.0 210 60.0
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 2.3e-61 240.0 222 56.8
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 2.3e-61 240.0 205 61.0
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 3.0e-61 239.6 203 62.1
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 1.5e-60 237.3 175 73.7
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.5e-60 236.5 187 65.8
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.8e-59 233.0 206 58.7
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 3.7e-59 232.6 173 67.6
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 4.8e-59 232.3 216 59.3
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 8.2e-59 231.5 211 57.8
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 8.2e-59 231.5 200 59.0
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 1.1e-58 231.1 204 58.8
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.1e-58 231.1 241 51.5
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 2.4e-58 229.9 222 57.7
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 3.1e-58 229.6 206 59.2
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 3.1e-58 229.6 213 56.3
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 4.1e-58 229.2 175 67.4
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 9.0e-58 228.0 194 66.5
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 1.7e-56 223.8 201 56.2
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 8.5e-56 221.5 198 57.6
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.4e-55 220.7 201 55.7
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 9.3e-55 218.0 187 59.4
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 6.1e-54 215.3 187 59.4
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 3.9e-53 212.6 250 50.4
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 5.1e-53 212.2 196 57.1
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 9.0e-50 201.4 215 51.2
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.3e-48 197.6 219 46.6
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 6.1e-46 188.7 172 58.1
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 4.4e-44 182.6 170 57.6
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.2e-41 174.5 231 43.7
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 2.5e-39 166.8 216 40.3
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.6e-38 162.9 137 62.8
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.9e-37 159.5 203 40.4
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.1e-36 157.9 232 47.8
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 8.2e-35 151.8 193 43.5
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.4e-34 151.0 279 42.7
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 8.5e-32 141.7 83 81.9
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.1e-31 141.4 83 78.3
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.9e-31 140.6 83 81.9
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 9.4e-31 138.3 120 59.2
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 9.4e-31 138.3 146 50.7
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.1e-30 137.1 176 43.2
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.8e-29 134.0 97 68.0
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 6.3e-27 125.6 110 58.2
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.4e-26 124.4 120 55.8
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.0e-25 120.6 157 52.9
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 1.3e-24 117.9 77 70.1
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 1.7e-24 117.5 120 53.3
PGSC0003DMG400015763 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.7e-22 110.2 56 100.0
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.0e-17 94.0 73 61.6
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 5.9e-17 92.4 94 51.1
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 6.3e-11 72.4 61 57.4
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.4e-10 71.2 79 50.6
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 1.6e-06 57.8 50 58.0


User provided reference genes

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