Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 3.3e-110 401.7 209 100.0
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 7.2e-105 384.0 209 96.2
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.0e-103 380.2 209 95.2
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 3.6e-96 355.1 208 88.0
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.2e-78 297.0 209 74.6
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 9.8e-78 293.9 209 74.2
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 2.0e-75 286.2 210 71.9
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 3.5e-75 285.4 209 70.8
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 7.8e-75 284.3 209 70.8
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 2.3e-74 282.7 209 68.4
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.9e-74 282.3 209 70.3
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 5.0e-74 281.6 203 73.4
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 5.0e-74 281.6 208 70.2
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 1.9e-73 279.6 208 69.7
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 5.6e-73 278.1 209 71.8
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 5.6e-73 278.1 209 68.4
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.6e-72 276.6 205 70.2
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 2.1e-72 276.2 207 70.5
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 3.6e-72 275.4 209 68.9
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 6.1e-72 274.6 209 68.4
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 6.1e-72 274.6 211 70.6
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.8e-71 273.1 209 67.9
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 1.8e-71 273.1 211 69.7
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 6.8e-71 271.2 200 70.5
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 8.9e-71 270.8 209 68.4
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 2.0e-70 269.6 209 67.9
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 2.6e-70 269.2 209 68.9
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 9.8e-70 267.3 209 68.4
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 1.3e-69 266.9 207 66.7
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 1.7e-69 266.5 209 68.9
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 3.7e-69 265.4 209 67.0
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 1.1e-68 263.8 207 66.7
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 1.9e-68 263.1 210 69.0
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 4.1e-68 261.9 209 67.5
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 5.4e-68 261.5 207 65.7
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 7.0e-68 261.2 211 67.8
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 9.2e-68 260.8 207 65.7
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 4.6e-67 258.5 206 65.0
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 3.0e-66 255.8 197 70.6
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 8.6e-66 254.2 209 64.1
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 1.1e-65 253.8 212 64.2
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.5e-65 253.4 208 63.5
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 2.5e-65 252.7 210 65.2
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 5.6e-65 251.5 206 63.6
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.6e-64 250.0 209 61.7
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 4.7e-64 248.4 209 63.6
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 5.2e-63 245.0 182 68.7
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 6.8e-63 244.6 210 63.3
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 8.9e-63 244.2 207 62.8
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 7.5e-62 241.1 168 73.2
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 1.3e-61 240.4 207 58.9
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 3.7e-61 238.8 209 56.9
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.7e-58 229.9 207 57.0
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 3.6e-56 222.2 207 59.9
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 4.4e-54 215.3 209 57.4
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 3.7e-53 212.2 158 68.4
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.5e-51 205.7 209 55.0
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 4.6e-51 205.3 207 56.5
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 2.1e-48 196.4 209 53.6
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 9.9e-46 187.6 184 55.4
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.4e-44 183.7 106 86.8
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 5.4e-44 181.8 209 52.6
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 1.0e-42 177.6 106 83.0
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 1.4e-36 157.1 201 45.3
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.0e-34 151.0 204 44.1
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 5.3e-31 138.7 209 41.6
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 2.3e-26 123.2 106 58.5
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 8.1e-24 114.8 203 36.0
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 2.0e-22 110.2 121 49.6
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.0e-21 107.8 112 55.4
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 3.0e-18 96.3 79 59.5
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 5.1e-18 95.5 201 33.3
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 2.5e-17 93.2 116 39.7
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.1e-16 90.1 103 45.6
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 8.4e-13 78.2 188 31.4
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.5e-12 76.6 54 72.2
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 1.4e-07 60.8 182 26.9
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 1.8e-07 60.5 191 28.3
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 5.3e-07 58.9 167 31.1
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 7.7e-06 55.1 121 33.9
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 7.7e-06 55.1 207 26.1


User provided reference genes

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