Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 2.6e-80 302.0 152 100.0
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 2.6e-56 222.2 152 78.3
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 4.5e-56 221.5 152 78.3
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 2.9e-47 192.2 157 66.2
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 1.3e-31 140.2 159 52.2
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 2.5e-22 109.4 172 43.6
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 5.5e-22 108.2 155 42.6
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 4.7e-21 105.1 156 40.4
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 1.4e-20 103.6 169 41.4
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 3.0e-20 102.4 153 41.8
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 2.6e-19 99.4 159 41.5
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 3.4e-19 99.0 158 41.1
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 1.3e-18 97.1 158 43.7
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 2.2e-18 96.3 161 38.5
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 1.1e-17 94.0 162 37.0
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 1.8e-17 93.2 164 35.4
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 2.4e-17 92.8 162 35.2
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 4.1e-17 92.0 164 36.6
Oeu028527.1 Olea europaea HOM05D007384 ORTHO05D008511 1.6e-16 90.1 152 38.2
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 3.5e-16 89.0 165 37.6
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 4.5e-16 88.6 154 37.0
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 1.3e-15 87.0 150 41.3
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 2.9e-15 85.9 156 39.7
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 2.9e-15 85.9 153 39.9
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 1.1e-14 84.0 161 39.1
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 1.1e-14 84.0 165 37.0
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 1.9e-14 83.2 158 37.3
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 1.9e-14 83.2 155 36.8
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 2.5e-14 82.8 143 37.8
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 3.3e-14 82.4 158 36.7
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 3.3e-14 82.4 169 37.3
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 9.5e-14 80.9 155 36.8
Sc07g0001520 Simmondsia chinensis HOM05D007384 ORTHO05D008511 1.2e-13 80.5 149 39.6
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 4.7e-13 78.6 170 36.5
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 6.1e-13 78.2 158 36.1
SalBow6G3892 Salvia bowleyana HOM05D007384 ORTHO05D008511 8.0e-13 77.8 152 31.6
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 1.0e-12 77.4 160 34.4
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 1.0e-12 77.4 170 32.4
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 1.8e-12 76.6 170 32.4
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 4.0e-12 75.5 158 36.1
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 4.0e-12 75.5 159 34.6
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 5.2e-12 75.1 163 33.7
unitig_736.g22624 Utricularia gibba HOM05D007384 ORTHO05D008511 2.0e-11 73.2 144 35.4
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 4.4e-11 72.0 174 35.1
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 7.5e-11 71.2 156 36.5
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.3e-10 70.5 152 38.2
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 1.3e-10 70.5 137 37.2
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 2.9e-10 69.3 152 31.6
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 3.7e-10 68.9 161 34.2
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 3.7e-10 68.9 161 34.2
SGA_v2.0_scaffold2G01297 Striga asiatica HOM05D007384 ORTHO05D008511 3.7e-10 68.9 150 30.0
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 6.4e-10 68.2 152 37.5
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 1.1e-09 67.4 154 35.1
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 1.4e-09 67.0 160 34.4
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 4.1e-09 65.5 174 32.8
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 4.1e-09 65.5 156 34.0
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 5.4e-09 65.1 146 34.2
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 7.0e-09 64.7 175 33.1
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 7.0e-09 64.7 172 33.1
DCAR_001367 Daucus carota HOM05D007384 ORTHO05D008511 7.0e-09 64.7 150 30.0
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 2.7e-08 62.8 75 48.0
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 2.7e-08 62.8 160 34.4
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 2.7e-08 62.8 159 35.2
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 3.5e-08 62.4 163 29.4
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 3.5e-08 62.4 161 32.3
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 5.9e-08 61.6 158 34.8
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 7.8e-08 61.2 177 29.4
unitig_899.g14602 Utricularia gibba HOM05D007384 ORTHO05D008511 1.0e-07 60.8 145 31.0
QL06p032302 Quercus lobata HOM05D007384 ORTHO05D008511 6.6e-07 58.2 67 52.2
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 1.5e-06 57.0 167 30.5
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 1.5e-06 57.0 165 30.3
Migut.L00076 Erythranthe guttata HOM05D007384 ORTHO05D008511 1.5e-06 57.0 155 31.0
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 1.9e-06 56.6 175 32.0
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 2.5e-06 56.2 166 29.5
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 3.3e-06 55.8 147 29.3
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 4.3e-06 55.5 156 32.1
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 7.3e-06 54.7 158 29.1
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 7.3e-06 54.7 166 28.3
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 9.5e-06 54.3 159 30.8
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 9.5e-06 54.3 168 31.5


User provided reference genes

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