Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 1.1e-96 356.7 184 100.0
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 4.4e-90 334.7 180 94.4
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 1.1e-88 330.1 178 93.8
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 1.1e-88 330.1 178 93.8
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 1.9e-72 276.2 186 82.3
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 5.6e-69 264.6 179 74.9
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 1.6e-68 263.1 179 74.9
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 4.7e-68 261.5 185 73.0
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 6.2e-68 261.2 178 75.3
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 8.9e-67 257.3 182 73.1
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 2.0e-66 256.1 184 71.7
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 5.8e-66 254.6 186 72.6
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 9.9e-66 253.8 185 71.9
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 2.2e-65 252.7 185 71.9
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 3.8e-65 251.9 186 77.4
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 3.8e-65 251.9 193 70.5
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 1.9e-64 249.6 182 72.0
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.9e-64 249.6 190 70.0
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 2.4e-64 249.2 188 72.9
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 3.2e-64 248.8 187 72.2
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 5.4e-64 248.1 186 71.0
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 2.1e-63 246.1 184 71.2
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 2.7e-63 245.7 177 79.7
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 7.8e-63 244.2 191 67.5
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 1.0e-62 243.8 178 70.8
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 2.3e-62 242.7 179 72.1
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 3.0e-62 242.3 180 70.0
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 8.7e-62 240.7 192 68.8
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 2.5e-61 239.2 175 70.9
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 2.5e-61 239.2 187 69.5
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 3.3e-61 238.8 187 67.4
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 4.3e-61 238.4 187 69.0
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 5.6e-61 238.0 181 69.6
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 7.3e-61 237.7 185 71.4
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 7.3e-61 237.7 182 65.9
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 7.3e-61 237.7 185 69.7
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 9.6e-61 237.3 175 69.1
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 1.3e-60 236.9 189 68.3
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 1.3e-60 236.9 187 69.0
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 1.3e-60 236.9 186 67.2
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.3e-60 236.9 185 69.2
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.6e-60 236.5 183 65.6
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 2.1e-60 236.1 187 70.1
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 2.8e-60 235.7 187 67.9
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 2.8e-60 235.7 183 66.7
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.1e-59 233.8 178 66.9
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.4e-59 233.4 175 66.9
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 6.9e-59 231.1 183 68.3
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 6.9e-59 231.1 160 74.4
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 1.2e-58 230.3 185 68.1
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 1.5e-58 229.9 177 69.5
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.5e-58 229.9 180 65.0
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 2.6e-58 229.2 188 69.7
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 4.4e-58 228.4 183 66.7
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 1.7e-57 226.5 179 69.3
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 2.2e-57 226.1 179 69.8
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 2.9e-57 225.7 211 59.7
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 3.8e-57 225.3 181 69.6
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 3.8e-57 225.3 183 67.8
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 6.4e-57 224.6 184 65.8
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 1.1e-56 223.8 177 65.0
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.1e-56 223.8 182 63.2
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 1.9e-56 223.0 114 97.4
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 5.4e-56 221.5 182 62.6
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 5.4e-56 221.5 182 64.3
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 7.1e-56 221.1 170 68.8
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 7.1e-56 221.1 177 64.4
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 9.3e-56 220.7 179 64.2
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 2.1e-55 219.5 175 66.3
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.7e-55 219.2 182 64.3
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 3.5e-55 218.8 180 65.0
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 4.6e-55 218.4 172 65.1
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.0e-54 217.2 189 63.0
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.3e-54 216.9 205 60.0
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 1.3e-54 216.9 185 64.9
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.3e-54 216.1 189 61.9
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 2.3e-54 216.1 179 64.8
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 3.0e-54 215.7 180 67.8
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 6.6e-54 214.5 186 60.2
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 6.6e-54 214.5 189 61.9
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 6.6e-54 214.5 179 67.0
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 3.3e-53 212.2 120 90.8
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 3.3e-53 212.2 182 66.5
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 4.3e-53 211.8 180 67.2
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 9.6e-53 210.7 186 61.8
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 1.6e-52 209.9 178 62.9
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.1e-52 209.5 169 65.1
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.1e-51 207.2 130 78.5
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 1.2e-50 203.8 179 60.3
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 1.2e-50 203.8 192 59.9
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 2.0e-50 203.0 184 60.3
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 2.6e-50 202.6 186 60.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 5.8e-50 201.4 230 53.5
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 2.9e-49 199.1 181 60.2
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 3.2e-48 195.7 159 65.4
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 5.4e-48 194.9 169 65.1
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 7.1e-48 194.5 112 83.9
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.2e-47 193.7 112 83.9
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 2.1e-47 193.0 112 83.9
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 4.6e-47 191.8 170 62.4
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 7.9e-47 191.0 172 59.3
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 6.7e-46 188.0 112 82.1
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 8.7e-46 187.6 114 79.8
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 9.6e-45 184.1 169 59.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.8e-44 181.8 157 62.4
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 3.1e-43 179.1 161 63.4
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 3.1e-43 179.1 161 63.4
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.2e-42 177.2 186 55.9
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.8e-35 153.3 90 80.0
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.5e-34 150.2 90 78.9
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 2.0e-34 149.8 104 76.9
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.0e-34 149.8 88 80.7
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 3.4e-34 149.1 156 51.3
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 2.2e-33 146.4 103 66.0
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 1.1e-32 144.1 121 62.0
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 3.5e-31 139.0 90 74.4
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.5e-29 133.7 152 46.1
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 1.9e-29 133.3 97 64.9
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 1.6e-28 130.2 135 57.8
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 2.2e-28 129.8 101 60.4
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 8.2e-28 127.9 69 85.5
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.8e-27 126.7 89 65.2
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 9.0e-27 124.4 69 84.1
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.2e-26 124.0 94 62.8
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 1.4e-22 110.5 127 45.7
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 2.3e-22 109.8 81 65.4
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 4.1e-19 99.0 92 54.3
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.0e-09 65.5 85 36.5


User provided reference genes

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