Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 2.5e-166 588.6 277 100.0
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 5.3e-156 554.3 313 85.3
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 5.9e-155 550.8 313 85.3
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.2e-149 530.4 299 83.9
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.4e-148 528.9 303 82.8
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 3.8e-146 521.5 300 82.3
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 3.8e-138 495.0 304 77.6
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 2.0e-131 472.6 315 70.2
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 2.9e-130 468.8 314 71.0
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 5.0e-130 468.0 305 72.1
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.1e-128 462.6 314 70.1
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 6.1e-128 461.1 315 69.5
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.4e-127 459.9 314 69.7
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 3.0e-127 458.8 305 72.1
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.6e-126 455.7 306 72.2
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.6e-126 455.7 306 72.2
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 2.9e-125 452.2 304 69.7
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 3.7e-125 451.8 314 67.8
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 6.4e-125 451.1 318 68.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 8.3e-125 450.7 315 67.3
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.4e-124 449.1 305 69.8
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 2.4e-124 449.1 305 69.2
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.2e-123 446.8 314 68.8
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 3.5e-123 445.3 306 69.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 7.8e-123 444.1 305 69.2
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 7.8e-123 444.1 314 67.2
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.0e-122 443.7 313 67.7
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.3e-122 443.4 314 67.5
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.7e-122 443.0 308 68.2
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.3e-122 442.6 314 68.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 5.0e-122 441.4 307 69.1
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 6.6e-122 441.0 304 70.1
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.9e-121 439.5 304 69.4
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 3.3e-121 438.7 306 68.6
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 5.6e-121 438.0 314 66.6
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 5.6e-121 438.0 305 68.5
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.6e-121 438.0 305 68.5
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 5.6e-121 438.0 305 68.5
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.6e-121 438.0 305 69.8
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 5.6e-121 438.0 306 66.3
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.3e-121 437.6 305 67.9
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 7.3e-121 437.6 303 68.0
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 7.3e-121 437.6 307 68.7
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.2e-120 436.8 315 66.0
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.2e-120 436.8 314 66.9
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.6e-120 436.4 305 67.5
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.6e-120 436.4 314 66.2
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.1e-120 436.0 305 67.9
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 2.8e-120 435.6 319 66.1
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 4.7e-120 434.9 308 67.2
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 8.0e-120 434.1 305 66.9
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.0e-119 433.7 305 66.9
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.0e-119 433.7 305 67.5
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.0e-119 433.7 314 65.9
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.4e-119 433.3 314 65.6
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 2.3e-119 432.6 303 67.3
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 4.0e-119 431.8 305 68.9
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.0e-119 431.8 314 65.6
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 8.9e-119 430.6 302 66.6
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 8.9e-119 430.6 306 66.7
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.2e-118 430.3 306 67.0
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.2e-118 430.3 307 66.4
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 1.5e-118 429.9 314 66.9
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 2.0e-118 429.5 313 65.8
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.0e-118 429.5 305 67.9
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 3.4e-118 428.7 314 64.3
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 4.4e-118 428.3 304 66.8
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 7.5e-118 427.6 330 63.3
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 7.5e-118 427.6 330 63.3
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 7.5e-118 427.6 310 65.8
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.3e-117 426.8 313 64.9
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.2e-117 426.0 313 65.5
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.9e-117 425.6 303 66.7
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 3.7e-117 425.2 313 65.2
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 8.3e-117 424.1 315 63.5
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 8.3e-117 424.1 305 65.9
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 1.9e-116 422.9 304 67.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 1.9e-116 422.9 304 65.8
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.9e-116 422.9 305 65.6
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.4e-116 422.5 305 65.6
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 9.2e-116 420.6 304 67.8
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 9.2e-116 420.6 306 65.0
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 6.0e-115 417.9 317 65.6
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 6.0e-115 417.9 304 67.1
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 7.8e-115 417.5 318 63.2
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.0e-114 417.2 308 65.6
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 1.3e-114 416.8 304 66.1
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.3e-114 416.8 305 66.6
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.3e-114 416.0 313 63.3
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.0e-114 415.6 311 65.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.0e-114 415.6 276 70.7
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 3.9e-114 415.2 304 65.5
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 5.0e-114 414.8 304 66.4
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 6.6e-114 414.5 304 65.8
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.9e-113 412.9 304 65.5
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 4.3e-113 411.8 303 65.3
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 4.3e-113 411.8 305 66.2
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 5.6e-113 411.4 304 66.1
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 7.3e-113 411.0 304 65.5
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.1e-112 409.5 305 65.6
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 8.1e-112 407.5 311 63.7
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.1e-111 407.1 307 63.5
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.7e-109 399.8 307 63.8
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 4.1e-108 395.2 316 61.7
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.9e-106 388.7 307 62.2
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.3e-105 385.6 308 61.7
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 4.3e-105 385.2 307 61.6
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 8.1e-104 380.9 307 59.0
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.0e-98 364.0 305 56.1
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 6.8e-95 351.3 304 55.9
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.4e-94 348.6 307 58.0
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 3.8e-93 345.5 290 55.9
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 4.9e-93 345.1 279 58.1
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.2e-91 340.5 273 65.6
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.1e-89 334.0 305 52.1
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.1e-88 329.7 303 53.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 2.0e-86 323.2 241 62.7
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-84 317.4 302 50.3
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.2e-84 315.5 434 43.1
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 9.9e-78 294.3 275 51.6
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.7e-77 293.5 306 50.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 3.8e-69 265.8 204 64.7
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 3.0e-66 256.1 211 59.7
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.6e-64 250.4 198 61.1
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 6.3e-64 248.4 145 78.6
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 8.2e-64 248.1 249 52.6
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 7.6e-62 241.5 238 52.9
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.8e-58 230.3 138 76.1
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 6.3e-56 221.9 176 60.8
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.1e-51 205.3 169 55.0
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.0e-41 173.7 98 74.5
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.3e-39 165.6 100 80.0
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.3e-33 146.4 103 67.0
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.8e-29 132.9 78 74.4
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.0e-27 125.2 73 75.3
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.2e-26 122.5 84 69.0
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 2.4e-23 113.6 89 69.7
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 9.1e-23 111.7 74 74.3
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.6e-22 110.9 310 27.7
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 7.7e-22 108.6 325 27.1
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.3e-16 91.3 194 30.9
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 6.1e-11 72.4 196 29.6
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.0e-10 71.6 49 71.4
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 3.0e-10 70.1 87 42.5
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 8.9e-10 68.6 42 76.2
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.4e-07 61.2 41 65.9
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.0e-06 57.4 27 85.2


User provided reference genes

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