Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.3e-24 114.4 64 100.0
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.6e-21 104.8 61 93.4
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.7e-20 102.1 60 93.3
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.7e-20 100.9 63 87.3
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.3e-20 99.8 63 85.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.4e-19 99.0 63 85.7
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.1e-19 97.4 63 82.5
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 4.1e-19 97.4 63 82.5
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 5.4e-19 97.1 60 88.3
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.6e-18 95.5 63 82.5
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.0e-18 95.1 63 81.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.7e-18 94.7 63 81.0
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.7e-18 94.7 63 79.4
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.7e-18 94.7 63 79.4
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 5.9e-18 93.6 63 77.8
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.9e-18 93.6 61 82.0
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 7.8e-18 93.2 63 77.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 7.8e-18 93.2 63 76.2
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.0e-17 92.8 60 85.0
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-17 92.0 63 77.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.3e-17 91.7 63 77.8
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.3e-17 91.7 64 79.7
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.3e-17 91.7 63 76.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.0e-17 91.3 63 76.2
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 3.0e-17 91.3 63 77.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 5.0e-17 90.5 61 85.2
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.6e-17 90.1 64 78.1
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 6.6e-17 90.1 61 83.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 6.6e-17 90.1 63 77.8
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 6.6e-17 90.1 61 85.2
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.6e-17 89.7 64 81.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 74.6
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 3.3e-16 87.8 63 76.2
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.3e-16 87.8 60 85.0
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.3e-16 87.8 63 74.6
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 3.3e-16 87.8 65 73.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 5.6e-16 87.0 62 75.8
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 7.3e-16 86.7 66 75.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 7.3e-16 86.7 63 74.6
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 7.3e-16 86.7 61 82.0
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 7.3e-16 86.7 66 74.2
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 7.3e-16 86.7 66 74.2
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 9.5e-16 86.3 63 76.2
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 9.5e-16 86.3 59 84.7
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 9.5e-16 86.3 60 76.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.2e-15 85.9 62 80.6
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.6e-15 85.5 61 78.7
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.6e-15 85.5 65 72.3
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-15 85.5 66 74.2
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.6e-15 85.5 60 75.0
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.6e-15 85.5 63 71.4
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 2.1e-15 85.1 64 78.1
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.8e-15 84.7 65 72.3
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.8e-15 84.7 64 73.4
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.8e-15 84.7 66 72.7
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.8e-15 84.7 66 72.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.6e-15 84.3 62 79.0
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.6e-15 84.3 65 72.3
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.6e-15 84.3 64 75.0
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 8.0e-15 83.2 63 69.8
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.0e-14 82.8 63 69.8
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.0e-14 82.8 66 72.7
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.4e-14 82.4 64 70.3
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-14 82.4 64 75.0
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.4e-14 82.4 64 73.4
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-14 82.0 65 72.3
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-14 82.0 65 72.3
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.3e-14 81.6 68 70.6
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.1e-14 81.3 65 70.8
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.1e-14 81.3 66 69.7
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.0e-14 80.9 66 68.2
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 6.8e-14 80.1 63 68.3
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-13 79.0 68 69.1
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.5e-13 79.0 65 69.2
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 3.4e-13 77.8 66 68.2
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 3.4e-13 77.8 63 71.4
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 4.4e-13 77.4 63 66.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 4.4e-13 77.4 59 76.3
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 7.5e-13 76.6 59 71.2
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 7.5e-13 76.6 65 69.2
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 7.5e-13 76.6 65 69.2
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.5e-13 76.6 67 67.2
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 9.8e-13 76.3 65 69.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 9.8e-13 76.3 65 69.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 9.8e-13 76.3 65 69.2
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-12 75.9 64 65.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.3e-12 75.9 64 65.6
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.3e-12 75.9 69 69.6
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.2e-12 75.1 63 66.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.9e-12 74.7 56 78.6
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.7e-12 74.3 52 82.7
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 8.3e-12 73.2 58 75.9
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.2e-11 71.2 60 61.7
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.2e-11 71.2 60 61.7
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.2e-11 71.2 68 61.8
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.1e-11 70.9 52 80.8
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 6.0e-10 67.0 61 62.3
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.0e-09 66.2 71 54.9
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 3.0e-09 64.7 62 58.1
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.9e-08 62.0 77 50.6
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 3.3e-08 61.2 62 59.7
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 3.3e-08 61.2 62 64.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 56.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 9.5e-08 59.7 58 58.6
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.5e-08 59.7 58 58.6
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.2e-07 59.3 58 58.6
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.6e-07 58.9 59 55.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.1e-07 58.5 58 55.2
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 2.8e-07 58.2 58 56.9
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.8e-07 58.2 59 50.8
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.8e-07 58.2 58 56.9
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.6e-07 57.8 60 55.0
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.6e-07 57.8 60 55.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.7e-07 57.4 52 59.6
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.7e-07 57.4 62 53.2
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.7e-07 57.4 58 55.2
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.7e-07 57.4 58 55.2
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 6.2e-07 57.0 52 59.6
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 6.2e-07 57.0 62 51.6
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.1e-07 56.6 54 57.4
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 57 52.6
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.4e-06 55.8 58 53.4
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 57 52.6
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 57 52.6
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.3e-06 55.1 58 58.6
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.3e-06 55.1 58 55.2
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.3e-06 55.1 54 59.3
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 3.1e-06 54.7 55 56.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.1e-06 54.7 58 53.4
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.1e-06 54.7 58 55.2
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.0e-06 54.3 69 52.2
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 4.0e-06 54.3 59 52.5
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 5.2e-06 53.9 61 52.5
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 5.2e-06 53.9 59 50.8
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 6.8e-06 53.5 58 56.9
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.8e-06 53.5 58 56.9
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 6.8e-06 53.5 54 53.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 8.9e-06 53.1 58 50.0
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 8.9e-06 53.1 56 57.1


User provided reference genes

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