Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 1.2e-240 836.3 462 100.0
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 3.0e-180 635.6 440 82.7
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 2.0e-171 606.3 442 79.4
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 2.9e-154 549.3 433 72.1
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 4.9e-146 521.9 439 69.5
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 1.4e-140 503.8 377 77.7
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 5.4e-137 491.9 439 68.6
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 8.2e-101 371.7 435 51.3
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 4.6e-96 355.9 431 51.3
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 5.1e-95 352.4 419 52.0
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 8.2e-93 345.1 439 48.5
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 1.8e-87 327.4 435 48.3
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.8e-87 327.4 415 48.9
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 1.5e-86 324.3 411 50.4
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.3e-85 321.2 377 54.6
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 3.7e-85 319.7 420 48.8
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 4.1e-84 316.2 416 48.8
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 4.1e-84 316.2 418 48.6
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 5.3e-84 315.8 419 47.3
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 1.2e-83 314.7 424 47.6
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 1.2e-83 314.7 399 50.4
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 2.6e-83 313.5 443 45.8
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 3.4e-83 313.2 418 48.1
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 3.6e-80 303.1 437 44.6
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 6.1e-80 302.4 415 46.0
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 6.1e-80 302.4 431 45.0
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 1.4e-79 301.2 405 48.4
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.1e-78 298.1 420 47.1
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.7e-77 294.3 422 45.3
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 3.5e-75 286.6 437 43.0
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 7.7e-75 285.4 419 44.2
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 7.7e-75 285.4 413 44.8
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 8.5e-74 282.0 415 44.1
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 3.2e-73 280.0 425 44.0
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 2.7e-72 276.9 415 45.8
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 2.3e-71 273.9 425 42.1
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 1.5e-70 271.2 414 44.9
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 7.5e-70 268.9 419 42.7
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 7.5e-70 268.9 396 46.5
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 8.2e-69 265.4 336 50.0
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 1.1e-68 265.0 408 44.1
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 9.1e-68 261.9 343 47.8
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 1.6e-67 261.2 424 43.9
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 4.5e-67 259.6 413 42.6
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 7.7e-67 258.8 425 42.6
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 1.0e-66 258.5 439 42.1
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.2e-66 257.3 448 41.1
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.8e-66 256.5 422 42.2
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 6.5e-66 255.8 354 46.9
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 8.5e-66 255.4 339 46.9
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 1.1e-65 255.0 408 43.6
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 9.4e-65 251.9 421 42.0
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 6.1e-64 249.2 461 41.2
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 8.0e-64 248.8 385 42.9
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 8.0e-64 248.8 419 41.8
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 8.0e-64 248.8 418 41.4
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 1.0e-63 248.4 358 46.1
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 1.8e-63 247.7 412 42.0
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 4.0e-63 246.5 414 41.5
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 6.8e-63 245.7 323 48.3
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.2e-62 245.0 420 41.0
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 1.5e-62 244.6 418 41.4
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 2.6e-62 243.8 418 40.4
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 3.4e-62 243.4 413 41.6
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 3.4e-62 243.4 421 41.3
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 4.4e-62 243.0 417 40.8
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 5.7e-62 242.7 276 51.8
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 7.5e-62 242.3 359 43.7
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 9.8e-62 241.9 440 39.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.8e-61 240.4 422 42.4
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 3.7e-61 240.0 414 40.8
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 3.7e-61 240.0 352 45.7
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.1e-60 238.4 423 41.6
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 1.8e-60 237.7 417 41.7
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 4.1e-60 236.5 426 43.0
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 4.1e-60 236.5 426 43.0
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 4.1e-60 236.5 416 42.8
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 4.1e-60 236.5 388 42.3
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 5.9e-59 232.6 415 41.0
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 7.7e-59 232.3 357 42.9
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 1.3e-58 231.5 448 39.3
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 8.6e-58 228.8 417 43.2
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 1.5e-57 228.0 404 40.1
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 3.2e-57 226.9 416 40.6
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.6e-56 223.4 409 41.6
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 6.8e-55 219.2 421 38.7
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 6.8e-55 219.2 423 39.2
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 8.8e-55 218.8 420 40.0
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 8.3e-53 212.2 427 36.8
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 1.8e-52 211.1 406 38.7
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 5.4e-52 209.5 425 36.2
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 2.7e-51 207.2 427 38.6
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 2.7e-51 207.2 427 38.6
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 1.7e-50 204.5 438 37.9
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 8.0e-48 195.7 422 35.8
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 2.3e-47 194.1 358 38.0
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 3.7e-45 186.8 421 35.2
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 2.4e-44 184.1 296 42.6
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 1.7e-42 177.9 298 43.0
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 1.1e-41 175.3 304 42.4
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 7.3e-41 172.6 345 36.5
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 1.2e-40 171.8 424 34.0
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 1.2e-40 171.8 344 36.3
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 8.0e-40 169.1 425 34.1
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 6.8e-31 139.4 288 39.2
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 1.2e-30 138.7 424 30.7
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 7.5e-30 136.0 362 31.5
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 1.3e-26 125.2 422 29.1
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 3.6e-24 117.1 227 36.1
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 2.0e-22 111.3 440 26.8
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 5.8e-22 109.8 423 26.7
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.2e-21 107.8 82 72.0
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 2.1e-19 101.3 228 36.0
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 5.1e-18 96.7 380 28.2
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 8.1e-16 89.4 73 68.5
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 8.1e-16 89.4 75 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1629 Anthoceros agrestis HOM05D006409 ORTHO05D008250 5.6e-09 66.6 250 25.2
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 7.3e-09 66.2 79 46.8
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 1.6e-08 65.1 170 34.1


User provided reference genes

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