Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 0.0e+00 1200.3 656 100.0
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 0.0e+00 1148.3 662 95.9
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 0.0e+00 1134.8 587 98.3
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 0.0e+00 1087.8 664 85.8
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 0.0e+00 1075.5 657 86.6
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.4e-308 1060.4 663 84.6
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 9.6e-281 969.9 608 84.4
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 9.4e-252 873.6 546 76.7
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.0e-249 865.9 556 76.1
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.0e-249 865.9 556 76.1
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.1e-244 850.1 546 75.3
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 7.2e-244 847.4 666 65.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 9.4e-244 847.0 526 77.2
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.0e-242 843.6 549 73.0
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 9.7e-241 837.0 653 69.8
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 4.5e-238 828.2 546 72.5
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.0e-237 827.0 675 64.3
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.9e-237 825.5 547 72.9
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.8e-237 825.1 548 72.6
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.5e-237 824.3 546 73.4
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.5e-237 824.3 547 72.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.5e-237 823.9 546 73.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.1e-236 823.5 683 62.1
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.1e-236 823.5 546 73.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 5.5e-236 821.2 683 61.9
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.1e-235 819.3 546 72.9
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 3.6e-235 818.5 546 70.5
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.6e-235 818.5 551 73.1
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.7e-235 818.1 560 72.1
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.0e-235 817.4 560 72.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 4.0e-234 815.1 556 70.5
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 6.8e-234 814.3 664 62.7
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.2e-233 813.5 548 71.9
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 2.6e-233 812.4 546 72.2
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.6e-233 812.4 549 71.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 4.4e-233 811.6 543 71.5
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 5.7e-233 811.2 548 70.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.8e-232 808.9 547 72.2
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 3.7e-232 808.5 669 61.3
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.8e-231 806.2 547 71.3
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 7.0e-231 804.3 545 70.5
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.0e-230 802.7 546 70.9
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-230 802.7 546 70.9
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-230 802.7 673 61.1
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 2.7e-230 802.4 657 63.9
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.7e-230 802.4 550 69.8
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.7e-230 800.8 546 70.7
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-229 800.4 546 70.7
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.7e-229 799.7 554 70.6
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.3e-229 799.3 677 61.0
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.3e-229 799.3 671 60.4
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.3e-229 799.3 547 70.6
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-228 797.0 546 70.5
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 5.5e-228 794.7 677 60.7
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 7.2e-228 794.3 557 68.8
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 9.5e-228 793.9 561 69.9
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.2e-227 793.5 555 69.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.6e-227 793.1 547 71.5
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.1e-227 792.7 556 68.7
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 3.6e-227 792.0 547 70.2
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.0e-226 788.9 547 69.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 4.0e-226 788.5 669 61.4
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.2e-225 786.9 670 61.0
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 3.4e-225 785.4 556 69.6
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 7.5e-225 784.3 555 69.2
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 7.5e-225 784.3 555 69.2
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.4e-223 780.0 667 62.1
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.1e-223 778.9 553 70.3
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 4.1e-223 778.5 548 69.5
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.2e-222 776.9 551 69.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.6e-222 776.5 548 69.7
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.7e-222 775.8 547 69.1
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.9e-220 769.6 550 69.5
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.3e-220 768.8 545 68.3
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 5.6e-220 768.1 541 69.7
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 4.7e-219 765.0 536 69.2
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 6.8e-218 761.1 546 68.9
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 8.9e-218 760.8 676 59.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 2.4e-215 752.7 562 66.4
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 7.0e-215 751.1 558 67.7
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 2.7e-214 749.2 540 69.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 4.6e-214 748.4 556 67.8
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.0e-213 747.3 506 71.5
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 2.3e-213 746.1 678 59.6
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 3.3e-212 742.3 558 66.8
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.4e-210 736.9 548 67.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-210 736.9 676 58.6
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.8e-210 736.5 563 65.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 2.3e-210 736.1 571 65.3
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 3.1e-210 735.7 560 65.5
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.2e-209 733.8 569 64.7
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.9e-208 729.2 549 65.9
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 6.4e-208 728.0 550 65.6
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 3.2e-207 725.7 551 66.2
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 5.4e-207 724.9 546 65.2
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 7.0e-207 724.5 551 66.1
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 7.8e-206 721.1 554 65.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 7.8e-206 721.1 554 65.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 7.8e-206 721.1 554 65.9
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.1e-203 711.1 553 64.6
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.1e-202 709.1 527 67.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 6.8e-202 708.0 550 64.2
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.2e-201 707.2 549 66.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 5.8e-201 704.9 665 61.4
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.7e-200 703.4 540 63.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 8.3e-200 701.0 515 68.3
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 7.8e-198 694.5 549 63.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.1e-196 690.6 492 68.9
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 3.6e-195 685.6 535 67.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.4e-194 683.7 553 61.5
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 2.4e-191 672.9 552 63.2
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 3.6e-187 659.1 670 54.6
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 4.7e-187 658.7 670 54.6
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 4.7e-187 658.7 670 54.6
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.9e-183 646.7 673 54.5
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.1e-181 638.6 549 59.9
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.4e-178 629.8 670 53.4
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.7e-176 623.6 555 58.7
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.2e-176 623.2 576 57.6
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.2e-171 605.1 430 70.5
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.3e-168 597.4 547 58.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.3e-168 597.4 570 56.8
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 7.1e-159 565.1 593 52.1
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.8e-155 552.4 453 62.9
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 6.3e-155 552.0 405 67.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 2.8e-147 526.6 314 79.0
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 4.1e-146 522.7 553 51.0
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.5e-137 493.0 551 47.5
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 3.6e-126 456.4 336 65.8
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 5.3e-122 442.6 381 57.2
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.8e-120 436.4 391 55.5
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.5e-97 360.1 285 62.1
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 2.4e-82 310.8 347 51.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.1e-78 297.7 547 36.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.4e-66 258.5 392 40.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.2e-60 238.8 214 57.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 4.9e-59 233.4 176 64.8
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.4e-42 178.7 141 60.3
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.6e-36 157.9 164 52.4
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 2.3e-32 144.8 296 31.1
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 5.5e-26 123.6 77 77.9
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.3e-23 114.4 101 59.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.5e-18 98.2 96 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 5.5e-18 97.1 163 34.4
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 6.1e-17 93.6 95 52.6
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.7e-11 75.5 59 57.6
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 3.0e-08 64.7 57 61.4
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 2.0e-07 62.0 33 84.8


User provided reference genes

Program Settings