Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 0.0e+00 1668.7 931 100.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 0.0e+00 1540.0 958 89.7
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 0.0e+00 1535.0 963 89.5
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 0.0e+00 1384.8 959 82.4
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 0.0e+00 1380.2 960 81.1
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 0.0e+00 1361.7 979 79.4
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 0.0e+00 1187.9 963 72.9
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.1e-269 931.8 956 60.7
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.7e-260 902.5 963 58.8
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 2.9e-254 882.5 970 58.6
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.9e-253 879.8 918 58.7
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 2.0e-247 859.8 1000 56.8
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.6e-239 832.8 911 56.6
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 6.4e-238 828.2 966 55.9
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 3.3e-234 815.8 861 56.8
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 2.1e-233 813.1 961 55.8
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 4.0e-232 808.9 961 54.2
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.6e-231 806.2 929 55.5
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 6.4e-230 801.6 954 54.6
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.6e-228 795.4 966 54.3
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.8e-227 793.5 852 57.9
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 3.0e-227 792.7 979 53.8
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.6e-226 788.5 879 56.2
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.2e-223 780.8 962 54.1
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 7.6e-223 778.1 895 55.0
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.6e-220 770.4 932 52.6
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.9e-218 763.5 863 54.8
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.4e-218 761.5 929 52.7
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-217 760.0 959 50.9
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.8e-216 756.9 958 54.7
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 5.3e-216 755.4 955 51.6
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.9e-216 755.0 898 54.3
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-216 754.6 905 53.5
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 5.9e-215 751.9 898 54.0
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 3.8e-214 749.2 865 54.3
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 3.8e-214 749.2 961 52.4
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.2e-213 746.1 898 53.9
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 4.2e-213 745.7 956 51.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.5e-212 742.7 898 53.7
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.8e-209 733.0 874 54.1
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.1e-208 729.6 973 49.4
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 9.0e-208 728.0 902 52.2
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.6e-207 726.5 951 50.7
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 6.5e-206 721.8 959 48.9
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 4.2e-205 719.2 899 51.6
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.7e-204 716.5 955 51.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 6.1e-204 715.3 900 52.7
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 6.1e-204 715.3 900 52.7
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 1.8e-203 713.8 914 51.4
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 2.0e-202 710.3 961 51.3
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.5e-202 709.9 910 52.5
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.4e-200 703.4 886 53.4
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.9e-200 701.8 905 51.2
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.4e-199 699.5 921 50.8
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-197 693.7 905 51.6
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.5e-197 693.3 960 48.3
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.2e-197 692.6 916 51.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.6e-196 690.6 783 57.3
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-196 690.3 918 50.5
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.1e-196 690.3 964 48.1
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 2.1e-196 690.3 922 49.6
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 6.1e-196 688.7 878 50.7
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 6.1e-196 688.7 912 50.2
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.0e-195 688.0 820 54.5
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.8e-195 687.2 897 50.8
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.7e-195 685.3 855 50.3
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-194 684.5 889 50.7
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 2.6e-194 683.3 962 47.4
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 2.0e-191 673.7 1043 46.2
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 4.5e-191 672.5 1036 45.0
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.2e-189 666.0 955 49.4
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 4.0e-187 659.4 892 49.9
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 9.7e-186 654.8 895 48.6
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 9.7e-186 654.8 897 49.1
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 8.2e-185 651.7 948 46.7
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.1e-184 651.4 966 46.0
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.1e-184 651.4 907 49.1
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 2.0e-183 647.1 815 54.0
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.0e-179 634.8 926 48.9
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 1.1e-176 624.8 912 48.7
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.1e-176 624.8 972 46.5
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.1e-173 614.8 927 47.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-171 606.7 852 49.1
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 4.9e-169 599.4 923 47.2
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.4e-168 595.9 927 46.5
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 2.7e-167 593.6 890 47.4
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 5.9e-167 592.4 916 46.4
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 7.7e-167 592.0 900 45.9
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 8.6e-166 588.6 922 46.7
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.1e-165 588.2 922 43.9
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 5.2e-163 579.3 783 47.6
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 5.2e-163 579.3 918 45.6
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.2e-159 568.2 926 44.2
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.3e-158 564.7 496 65.3
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 3.0e-158 563.5 909 44.0
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.1e-157 561.6 912 45.0
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 2.5e-157 560.5 912 45.0
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 3.3e-157 560.1 935 42.7
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 4.3e-157 559.7 897 45.2
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 9.5e-157 558.5 961 44.0
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.6e-156 557.8 937 42.7
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.6e-156 557.8 973 44.8
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 3.2e-152 543.5 805 48.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 9.2e-152 542.0 917 42.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.6e-148 531.2 925 41.9
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.7e-145 521.2 913 44.0
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.2e-143 515.0 901 42.6
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 9.5e-141 505.4 905 41.0
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 7.6e-138 495.7 843 41.8
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 3.5e-135 486.9 760 48.2
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 1.3e-134 485.0 562 52.0
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 2.1e-124 451.1 905 39.2
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 3.5e-111 407.1 864 38.2
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.8e-107 394.8 602 44.7
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.9e-104 384.8 671 46.3
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 6.3e-100 369.8 479 49.5
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 7.6e-98 362.8 624 43.9
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.7e-93 346.7 536 45.7
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 5.0e-89 333.6 236 69.5
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.2e-88 330.9 423 53.0
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 6.7e-86 323.2 447 51.2
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.8e-78 296.2 399 49.1
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.5e-74 284.3 531 40.1
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.8e-67 261.9 401 47.4
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.8e-57 227.6 181 66.9
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.2e-56 224.6 660 33.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 7.5e-53 213.4 201 55.7
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 2.0e-50 205.3 214 58.9
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 1.2e-47 196.1 887 28.3
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 2.3e-41 175.3 166 57.2
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 2.2e-36 158.7 290 39.7
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-34 152.1 160 57.5
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.3e-33 149.4 669 31.4
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-33 149.1 167 54.5
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.6e-31 141.4 233 37.8
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-30 138.3 332 38.9
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.6e-29 135.2 162 54.3
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 7.5e-29 133.7 166 48.8
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.2e-28 132.1 625 26.9
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-27 129.0 169 52.7
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.1e-27 127.9 97 62.9
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.1e-27 127.9 97 62.9
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 8.1e-23 113.6 260 38.5
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 2.9e-20 105.1 110 60.0
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-19 102.1 401 35.4
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.1e-17 94.4 159 35.8
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.6e-15 89.4 120 46.7
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-14 83.6 274 38.3
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.0e-14 83.6 186 33.9
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.0e-14 83.6 186 33.9
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.2e-13 83.2 163 36.8
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.0e-13 82.4 65 70.8
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.6e-13 82.0 180 35.6
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.6e-13 82.0 180 35.6
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-13 80.9 274 37.6
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 6.4e-12 77.4 271 28.4
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-09 69.7 107 46.7
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-09 69.3 41 85.4
arahy.Tifrunner.gnm1.ann1.XCJ58K Arachis hypogaea HOM05D004001 ORTHO05D004559 8.7e-09 67.0 64 60.9
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-08 66.6 97 43.3
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.9e-08 65.9 42 76.2
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-07 62.8 59 62.7
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.1e-07 62.4 130 40.0
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.8e-07 62.0 56 57.1
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 2.8e-07 62.0 46 58.7
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 2.8e-07 62.0 46 58.7
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 3.6e-07 61.6 55 58.2
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 1.4e-06 59.7 42 69.0
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 1.8e-06 59.3 53 56.6
unitig_31.g34037 Utricularia gibba HOM05D004001 ORTHO05D004559 3.1e-06 58.5 98 43.9
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 5.3e-06 57.8 94 41.5
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-06 57.0 50 54.0


User provided reference genes

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