Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012743 Solanum tuberosum HOM05D003775 ORTHO05D004314 7.6e-74 280.4 142 100.0
PGSC0003DMG400012744 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.8e-46 189.5 135 71.1
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 8.8e-38 160.6 123 68.3
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 8.8e-38 160.6 123 68.3
PGSC0003DMG400012740 Solanum tuberosum HOM05D003775 ORTHO05D004314 2.4e-35 152.5 160 56.9
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 2.0e-34 149.4 115 67.8
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.1e-32 143.7 123 61.8
Lsat_1_v5_gn_1_98220 Lactuca sativa HOM05D003775 ORTHO05D004314 1.6e-31 139.8 123 57.7
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 2.7e-31 139.0 124 58.1
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 4.7e-31 138.3 124 58.1
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 4.7e-31 138.3 124 58.1
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 8.0e-31 137.5 129 58.9
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 1.4e-30 136.7 125 58.4
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 2.3e-30 136.0 124 58.1
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 2.3e-30 136.0 124 58.1
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 2.3e-30 136.0 123 55.3
CDE02G2263 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 4.0e-30 135.2 123 54.5
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 4.0e-30 135.2 124 58.1
CDE09G1021 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 5.2e-30 134.8 123 55.3
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 6.7e-30 134.4 115 58.3
Migut.N01820 Erythranthe guttata HOM05D003775 ORTHO05D004314 8.8e-30 134.0 124 56.5
Migut.O00905 Erythranthe guttata HOM05D003775 ORTHO05D004314 8.8e-30 134.0 124 56.5
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 8.8e-30 134.0 116 59.5
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 1.5e-29 133.3 124 57.3
HanXRQChr01g0020841 Helianthus annuus HOM05D003775 ORTHO05D004314 3.3e-29 132.1 123 53.7
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 3.3e-29 132.1 124 58.1
ATR0721G058 Amborella trichopoda HOM05D003775 ORTHO05D004314 5.7e-29 131.3 123 54.5
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 5.7e-29 131.3 124 55.6
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 5.7e-29 131.3 124 57.3
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 5.7e-29 131.3 124 56.5
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 7.5e-29 131.0 123 56.9
HPP92_025001 Vanilla planifolia HOM05D003775 ORTHO05D004314 9.7e-29 130.6 123 53.7
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 3.7e-28 128.6 124 54.8
SGA_v2.0_scaffold354G49741 Striga asiatica HOM05D003775 ORTHO05D004314 3.7e-28 128.6 124 54.8
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 4.8e-28 128.3 116 59.5
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 4.8e-28 128.3 129 51.2
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 6.3e-28 127.9 125 54.4
Sc10g0004200 Simmondsia chinensis HOM05D003775 ORTHO05D004314 6.3e-28 127.9 124 54.8
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 8.2e-28 127.5 124 55.6
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 1.1e-27 127.1 129 49.6
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 1.1e-27 127.1 124 54.0
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 1.1e-27 127.1 126 54.8
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 1.1e-27 127.1 124 54.0
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 1.1e-27 127.1 124 54.8
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 1.4e-27 126.7 116 60.3
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.4e-27 126.7 124 54.8
FAN10G1046 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.4e-27 126.7 128 53.9
PGSC0003DMG400012741 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.4e-27 126.7 128 54.7
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 1.8e-27 126.3 124 54.0
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 1.8e-27 126.3 124 54.8
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 2.4e-27 125.9 124 54.8
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 2.4e-27 125.9 124 52.4
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 2.4e-27 125.9 124 52.4
DCAR_002120 Daucus carota HOM05D003775 ORTHO05D004314 3.1e-27 125.6 124 54.0
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 3.1e-27 125.6 125 53.6
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 3.1e-27 125.6 126 55.6
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 3.1e-27 125.6 124 52.4
Migut.N02350 Erythranthe guttata HOM05D003775 ORTHO05D004314 4.1e-27 125.2 124 53.2
BraA08t33864Z Brassica rapa HOM05D003775 ORTHO05D004314 5.3e-27 124.8 124 54.0
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 5.3e-27 124.8 124 54.0
Sed0004278 Sechium edule HOM05D003775 ORTHO05D004314 5.3e-27 124.8 123 55.3
SGA_v2.0_scaffold42G16081 Striga asiatica HOM05D003775 ORTHO05D004314 5.3e-27 124.8 124 53.2
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 7.0e-27 124.4 124 54.8
A08p19030 Brassica napus HOM05D003775 ORTHO05D004314 7.0e-27 124.4 124 54.0
C03p88460 Brassica napus HOM05D003775 ORTHO05D004314 7.0e-27 124.4 124 54.0
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 7.0e-27 124.4 124 52.4
BcaB03g12665 Brassica carinata HOM05D003775 ORTHO05D004314 9.1e-27 124.0 124 54.0
BcaC01g01133 Brassica carinata HOM05D003775 ORTHO05D004314 9.1e-27 124.0 124 54.0
BolC3t21154H Brassica oleracea HOM05D003775 ORTHO05D004314 9.1e-27 124.0 124 54.0
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 9.1e-27 124.0 126 54.8
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 9.1e-27 124.0 126 54.8
Sp7g28760 Schrenkiella parvula HOM05D003775 ORTHO05D004314 9.1e-27 124.0 124 54.0
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 1.2e-26 123.6 136 50.0
Lj1A317T43 Lonicera japonica HOM05D003775 ORTHO05D004314 1.2e-26 123.6 124 51.6
Lsat_1_v5_gn_6_26100 Lactuca sativa HOM05D003775 ORTHO05D004314 1.6e-26 123.2 129 49.6
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 1.6e-26 123.2 123 52.8
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 1.6e-26 123.2 124 55.6
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 2.0e-26 122.9 125 55.2
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 2.7e-26 122.5 124 52.4
arahy.Tifrunner.gnm1.ann1.IE4AJN Arachis hypogaea HOM05D003775 ORTHO05D004314 2.7e-26 122.5 124 52.4
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 2.7e-26 122.5 123 53.7
BraA01t00678Z Brassica rapa HOM05D003775 ORTHO05D004314 3.5e-26 122.1 124 53.2
Lalb_Chr01g0000601 Lupinus albus HOM05D003775 ORTHO05D004314 3.5e-26 122.1 122 51.6
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 3.5e-26 122.1 124 53.2
SalBow6G4543 Salvia bowleyana HOM05D003775 ORTHO05D004314 3.5e-26 122.1 124 52.4
BcaC09g51876 Brassica carinata HOM05D003775 ORTHO05D004314 4.5e-26 121.7 124 53.2
BcaNung03431 Brassica carinata HOM05D003775 ORTHO05D004314 4.5e-26 121.7 124 53.2
A01p07290 Brassica napus HOM05D003775 ORTHO05D004314 4.5e-26 121.7 124 53.2
C01p08050 Brassica napus HOM05D003775 ORTHO05D004314 4.5e-26 121.7 124 53.2
BolC1t00794H Brassica oleracea HOM05D003775 ORTHO05D004314 4.5e-26 121.7 124 53.2
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 4.5e-26 121.7 123 52.0
MSTRG.12454 Avicennia marina HOM05D003775 ORTHO05D004314 5.9e-26 121.3 124 50.8
Ah.05g171640 Amaranthus hybridus HOM05D003775 ORTHO05D004314 7.7e-26 120.9 124 54.0
C07p58270 Brassica napus HOM05D003775 ORTHO05D004314 7.7e-26 120.9 124 53.2
BolC7t46285H Brassica oleracea HOM05D003775 ORTHO05D004314 7.7e-26 120.9 124 53.2
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 7.7e-26 120.9 124 53.2
PGSC0003DMG400013186 Solanum tuberosum HOM05D003775 ORTHO05D004314 7.7e-26 120.9 124 51.6
Actinidia16351 Actinidia chinensis HOM05D003775 ORTHO05D004314 1.0e-25 120.6 124 52.4
Nitab4.5_0002726g0070 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.3e-25 120.2 124 51.6
Zm00001eb110870 Zea mays HOM05D003775 ORTHO05D004314 1.3e-25 120.2 119 52.1
A03p60400 Brassica napus HOM05D003775 ORTHO05D004314 1.7e-25 119.8 124 52.4
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 1.7e-25 119.8 124 53.2
SalBow6G0244 Salvia bowleyana HOM05D003775 ORTHO05D004314 1.7e-25 119.8 124 49.2
CANSAT80G1378 Cannabis sativa HOM05D003775 ORTHO05D004314 2.2e-25 119.4 124 50.8
Thhalv10025311m.g Eutrema salsugineum HOM05D003775 ORTHO05D004314 2.2e-25 119.4 124 51.6
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 2.2e-25 119.4 123 53.7
Sopen11g024920 Solanum pennellii HOM05D003775 ORTHO05D004314 2.2e-25 119.4 124 51.6
THA.LOC104819115 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 2.2e-25 119.4 124 53.2
unitig_0.g1004 Utricularia gibba HOM05D001495 ORTHO05D004314 2.2e-25 119.4 155 44.5
Actinidia06930 Actinidia chinensis HOM05D003775 ORTHO05D004314 2.9e-25 119.0 124 51.6
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 2.9e-25 119.0 124 50.0
Solyc11g065210.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 2.9e-25 119.0 124 50.8
AL7G21200 Arabidopsis lyrata HOM05D003775 ORTHO05D004314 5.0e-25 118.2 124 51.6
Carub.0007s0965 Capsella rubella HOM05D003775 ORTHO05D004314 5.0e-25 118.2 124 52.4
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 6.5e-25 117.9 124 50.8
Mapoly0004s0306 Marchantia polymorpha HOM05D003775 ORTHO05D004314 6.5e-25 117.9 129 45.7
CAN.G633.2 Capsicum annuum HOM05D003775 ORTHO05D004314 8.5e-25 117.5 116 54.3
Zm00001eb329890 Zea mays HOM05D003775 ORTHO05D004314 1.1e-24 117.1 115 52.2
Nn2g15064 Nelumbo nucifera HOM05D003775 ORTHO05D004314 1.5e-24 116.7 117 55.6
Aa31LG2G19490 Aethionema arabicum HOM05D003775 ORTHO05D004314 3.2e-24 115.5 124 52.4
AT4G30890 Arabidopsis thaliana HOM05D003775 ORTHO05D004314 3.2e-24 115.5 124 50.8
ECA233G1032 Erigeron canadensis HOM05D003775 ORTHO05D004314 3.2e-24 115.5 124 48.4
Os07g0661300 Oryza sativa ssp. japonica HOM05D003775 ORTHO05D004314 3.2e-24 115.5 115 52.2
PSO339G4517 Papaver somniferum HOM05D003775 ORTHO05D004314 3.2e-24 115.5 124 48.4
PSO384G3184 Papaver somniferum HOM05D003775 ORTHO05D004314 3.2e-24 115.5 124 48.4
unitig_22.g6197 Utricularia gibba HOM05D003775 ORTHO05D004314 3.2e-24 115.5 124 47.6
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 4.2e-24 115.2 125 51.2
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 5.5e-24 114.8 124 50.0
Oeu061300.1 Olea europaea HOM05D003775 ORTHO05D004314 2.7e-23 112.5 124 48.4
Oeu061301.1 Olea europaea HOM05D003775 ORTHO05D004314 2.7e-23 112.5 124 48.4
Cc01_g06210 Coffea canephora HOM05D003775 ORTHO05D004314 4.7e-23 111.7 123 51.2
Hma1.2p1_1200F.1_g266540 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 4.7e-23 111.7 124 46.8
THA.LOC104826715 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 4.7e-23 111.7 124 50.8
MD02G1296600 Malus domestica HOM05D003775 ORTHO05D004314 8.0e-23 110.9 107 55.1
Hma1.2p1_1694F.1_g298010 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 1.4e-22 110.2 124 46.8
Pp3c16_4180 Physcomitrium patens HOM05D003775 ORTHO05D004314 1.4e-22 110.2 129 45.7
CARHR238790 Cardamine hirsuta HOM05D003775 ORTHO05D004314 2.3e-22 109.4 124 49.2
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 2.3e-22 109.4 123 48.8
HanXRQChr13g0401471 Helianthus annuus HOM05D003775 ORTHO05D004314 4.0e-22 108.6 124 45.2
TPR.G20248 Trifolium pratense HOM05D003775 ORTHO05D004314 4.0e-22 108.6 123 48.8
BcaNung02733 Brassica carinata HOM05D003775 ORTHO05D004314 5.2e-22 108.2 124 50.0
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 8.8e-22 107.5 115 51.3
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 7.5e-21 104.4 119 47.9
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 4.5e-18 95.1 107 50.5
SEGI_11797 Sequoiadendron giganteum HOM05D003775 ORTHO05D004314 5.0e-17 91.7 94 45.7
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 8.6e-17 90.9 128 37.5
SGA_v2.0_scaffold42G16084 Striga asiatica HOM05D003775 ORTHO05D004314 8.6e-17 90.9 92 53.3
Lsat_1_v5_gn_4_28840 Lactuca sativa HOM05D003775 ORTHO05D004314 1.2e-15 87.0 89 49.4
Dinv36216 Davidia involucrata HOM05D003775 ORTHO05D004314 3.6e-15 85.5 78 51.3
AUR62014380 Chenopodium quinoa HOM05D003775 ORTHO05D004314 1.8e-14 83.2 78 52.6
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 6.8e-14 81.3 116 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2031 Anthoceros agrestis HOM05D003775 ORTHO05D004314 9.2e-11 70.9 113 34.5
Cfa024126 Carpinus fangiana HOM05D003775 ORTHO05D004314 1.0e-09 67.4 119 37.0
SMO165G0072 Selaginella moellendorffii HOM05D003775 ORTHO05D004314 6.6e-09 64.7 134 33.6
Dinv22154 Davidia involucrata HOM05D003775 ORTHO05D004314 1.1e-08 63.9 124 35.5
Cre05.g234850 Chlamydomonas reinhardtii HOM05D003775 ORTHO05D004314 2.5e-08 62.8 129 34.9
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 5.6e-08 61.6 123 31.7
SGA_v2.0_scaffold3339G54319 Striga asiatica HOM05D003775 ORTHO05D004314 7.3e-08 61.2 53 54.7
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 1.4e-06 57.0 123 32.5


User provided reference genes

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