Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 2.6e-226 788.5 426 100.0
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 9.2e-224 780.0 426 98.4
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 9.2e-224 780.0 426 95.1
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 7.8e-207 723.8 429 88.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.2e-188 661.0 441 85.5
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.4e-184 649.8 427 78.2
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 3.2e-184 648.7 335 97.0
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.1e-184 647.5 426 78.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.6e-183 646.4 392 82.4
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.9e-183 644.0 426 76.8
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.0e-182 643.7 427 77.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.8e-182 642.9 426 75.8
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.0e-182 642.1 430 77.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 3.9e-182 641.7 426 78.6
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 8.7e-182 640.6 426 77.5
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 5.6e-181 637.9 427 77.3
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 9.6e-181 637.1 395 80.3
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.6e-180 636.3 429 76.2
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.1e-180 636.0 429 78.1
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 3.7e-180 635.2 426 77.2
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.8e-180 634.8 428 76.6
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 6.2e-180 634.4 429 75.8
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 8.1e-180 634.0 426 76.8
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.8e-179 632.9 426 77.9
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 2.4e-179 632.5 426 77.7
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.1e-179 632.1 426 77.5
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 9.0e-179 630.6 428 77.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.5e-178 629.8 412 78.2
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.3e-177 626.7 430 76.3
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 2.2e-177 625.9 408 78.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 3.8e-177 625.2 389 80.7
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 4.9e-177 624.8 426 76.3
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 6.4e-177 624.4 408 78.2
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 6.4e-177 624.4 427 76.8
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 8.4e-177 624.0 427 76.1
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 8.4e-177 624.0 394 80.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.9e-176 622.9 428 75.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 4.2e-176 621.7 425 74.4
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 5.5e-176 621.3 426 75.4
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 9.3e-176 620.5 426 76.1
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.2e-175 620.2 427 74.7
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.2e-175 620.2 426 75.4
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.6e-175 619.8 426 76.1
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.6e-175 619.8 426 75.1
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 2.7e-175 619.0 427 74.7
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.6e-175 618.2 426 75.1
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.6e-175 618.2 428 75.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 7.9e-175 617.5 389 80.5
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.0e-174 617.1 426 74.9
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.0e-174 615.5 429 76.5
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.0e-174 615.5 429 75.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.9e-174 615.1 420 76.4
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 3.9e-174 615.1 426 75.8
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 5.1e-174 614.8 431 74.0
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 5.1e-174 614.8 392 79.1
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 8.7e-174 614.0 426 74.4
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.1e-173 613.6 426 74.2
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-173 613.2 429 74.1
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.9e-173 612.8 429 74.8
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.9e-173 612.8 395 78.7
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.3e-173 612.1 426 74.6
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 5.6e-173 611.3 426 74.4
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.6e-172 609.8 429 74.8
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 2.8e-172 609.0 426 75.4
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 4.8e-172 608.2 407 78.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 6.2e-172 607.8 389 79.2
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 2.4e-171 605.9 428 73.1
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.5e-170 603.2 426 72.3
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.5e-170 603.2 426 72.3
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.6e-170 602.4 432 71.5
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.4e-170 602.1 441 72.1
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 4.5e-170 601.7 426 72.5
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 7.6e-170 600.9 426 72.5
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.3e-169 600.1 432 71.1
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.2e-169 599.4 428 74.3
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.9e-169 599.0 427 72.1
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.8e-169 598.6 426 72.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.8e-169 598.6 426 72.8
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.8e-169 598.6 426 72.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 3.8e-169 598.6 431 71.7
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.9e-169 598.2 426 72.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 6.5e-169 597.8 408 77.0
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 8.4e-169 597.4 442 71.9
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.4e-169 597.4 431 71.9
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.1e-168 597.0 392 77.0
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.5e-168 595.9 427 71.9
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 3.2e-168 595.5 426 72.5
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.2e-168 595.5 431 71.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 4.2e-168 595.1 426 72.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 5.5e-168 594.7 426 72.5
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 5.5e-168 594.7 426 72.5
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 9.3e-168 594.0 426 72.3
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.2e-167 593.6 425 71.1
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.2e-167 593.6 428 72.2
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.2e-167 593.6 360 83.3
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.6e-167 593.2 392 77.6
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 3.5e-167 592.0 427 71.7
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 7.9e-167 590.9 431 71.9
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.0e-166 590.5 385 79.5
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.0e-166 590.5 420 72.9
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.8e-166 589.7 357 82.6
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.9e-166 588.6 433 71.6
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 6.7e-166 587.8 429 70.2
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-165 587.0 392 74.7
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.5e-165 585.9 361 80.1
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.5e-165 585.9 361 80.3
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 5.7e-165 584.7 410 74.1
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.3e-164 583.6 431 70.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.8e-164 582.4 411 73.2
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 4.8e-164 581.6 406 74.4
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 8.2e-164 580.9 392 74.5
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.4e-163 580.1 412 72.6
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.4e-163 579.3 430 69.5
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 6.9e-163 577.8 426 71.6
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.5e-162 576.6 354 80.8
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 3.4e-162 575.5 426 72.3
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 5.9e-162 574.7 406 73.4
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.7e-161 573.2 429 69.2
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.4e-160 570.1 428 68.5
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 4.2e-160 568.5 476 64.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.2e-159 567.0 382 76.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.7e-159 565.8 360 77.8
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.4e-158 563.5 431 70.1
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.8e-158 563.1 455 68.4
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 3.0e-158 562.4 412 71.4
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.0e-158 562.4 393 73.8
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 3.9e-158 562.0 353 80.2
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.5e-157 560.1 412 70.4
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.0e-153 547.4 379 74.9
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.6e-151 540.0 322 83.2
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.3e-148 530.4 360 71.4
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 8.2e-148 527.7 320 81.9
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.1e-147 525.8 426 66.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.5e-146 523.5 361 70.9
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.7e-145 520.0 360 70.0
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 3.8e-145 518.8 360 71.1
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.0e-141 506.5 370 69.2
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.2e-140 503.1 416 67.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 3.1e-139 499.2 430 64.4
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 2.0e-138 496.5 347 75.2
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 4.4e-133 478.8 361 69.3
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 9.7e-133 477.6 367 65.1
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 6.3e-132 474.9 370 65.1
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 3.8e-129 465.7 334 74.3
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.8e-124 449.5 347 66.9
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 4.5e-122 442.2 332 69.6
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.7e-121 440.3 402 62.4
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.6e-119 432.6 241 89.2
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.4e-118 430.6 371 60.9
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.2e-115 417.9 335 64.5
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.1e-111 406.8 271 73.4
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.9e-104 383.6 231 82.7
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.9e-96 357.1 376 51.3
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.5e-96 356.7 211 85.3
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.2e-95 354.4 383 50.9
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.5e-88 330.1 390 48.7
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 4.2e-83 312.8 273 57.5
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.0e-81 306.6 196 77.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.5e-77 294.3 352 53.1
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 6.7e-65 252.3 302 49.7
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 2.1e-63 247.3 151 80.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.8e-62 244.2 311 44.4
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.4e-61 240.0 222 59.0
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 9.0e-54 215.3 214 55.6
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.6e-53 213.8 304 41.4
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.2e-51 206.8 428 36.9
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.3e-48 196.4 182 58.8
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 4.3e-48 196.4 120 79.2
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.4e-30 138.3 75 85.3
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 8.8e-25 119.0 132 52.3
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.3e-24 117.1 69 81.2
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.4e-22 110.9 54 96.3
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.2e-19 100.5 75 62.7
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.7e-18 97.4 89 60.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.0e-17 94.0 61 70.5
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 8.3e-15 85.9 55 70.9
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.8e-14 84.7 122 44.3
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 4.1e-14 83.6 123 43.1
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 7.0e-14 82.8 60 66.7
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 2.5e-11 74.3 129 37.2
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 6.3e-07 59.7 55 56.4
TPR.G39825 Trifolium pratense HOM05D003740 ORTHO05D411371 3.1e-06 57.4 33 81.8


User provided reference genes

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