Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 3.0e-70 268.5 142 100.0
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 2.5e-64 248.8 142 93.0
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 2.8e-36 155.6 145 69.0
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 8.2e-28 127.5 142 59.9
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 7.0e-27 124.4 140 61.4
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 2.7e-26 122.5 140 60.7
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 7.7e-26 120.9 141 60.3
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 1.7e-25 119.8 140 60.0
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.5e-24 116.7 143 58.7
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 3.5e-18 95.5 172 47.1
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 5.9e-18 94.7 148 49.3
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 1.3e-17 93.6 144 46.5
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 8.6e-17 90.9 144 50.7
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.1e-16 90.5 148 48.0
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 1.5e-16 90.1 145 48.3
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 1.8e-14 83.2 137 43.8
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 6.8e-14 81.3 141 42.6
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 1.2e-13 80.5 139 46.0
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 4.4e-13 78.6 143 44.8
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 5.7e-13 78.2 143 42.0
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 1.7e-12 76.6 139 43.2
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.7e-12 76.6 143 47.6
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 1.7e-12 76.6 135 43.7
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 2.2e-12 76.3 145 45.5
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 2.2e-12 76.3 142 45.8
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 6.3e-12 74.7 141 42.6
Peaxi162Scf00080g00151 Petunia axillaris HOM05D007617 ORTHO05D007195 8.3e-12 74.3 141 46.8
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 1.1e-11 73.9 159 45.3
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 1.1e-11 73.9 141 44.7
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 2.4e-11 72.8 143 44.1
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 4.1e-11 72.0 139 41.0
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 5.4e-11 71.6 147 43.5
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 7.0e-11 71.2 139 41.7
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 7.0e-11 71.2 69 66.7
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 9.2e-11 70.9 142 41.5
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 9.2e-11 70.9 141 39.0
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 2.0e-10 69.7 114 45.6
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 2.7e-10 69.3 142 38.0
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 3.5e-10 68.9 135 42.2
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 5.9e-10 68.2 122 42.6
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 5.9e-10 68.2 66 62.1
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.9e-10 68.2 66 62.1
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.9e-10 68.2 66 62.1
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 5.9e-10 68.2 85 51.8
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 7.8e-10 67.8 143 37.8
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.0e-09 67.4 65 64.6
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 2.3e-09 66.2 65 61.5
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 2.3e-09 66.2 134 38.8
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 2.3e-09 66.2 149 35.6
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 3.8e-09 65.5 129 41.1
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 8.6e-09 64.3 141 39.7
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 1.1e-08 63.9 144 41.0
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 1.1e-08 63.9 71 50.7
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 2.5e-08 62.8 146 43.2
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 4.3e-08 62.0 68 52.9
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 4.3e-08 62.0 151 37.7
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 4.3e-08 62.0 145 38.6
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 5.6e-08 61.6 144 38.2
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 5.6e-08 61.6 144 37.5
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 5.6e-08 61.6 147 34.7
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 7.3e-08 61.2 86 47.7
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 7.3e-08 61.2 86 47.7
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 7.3e-08 61.2 66 60.6
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 9.5e-08 60.8 67 55.2
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 2.8e-07 59.3 139 39.6
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 2.8e-07 59.3 145 40.0
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 3.6e-07 58.9 139 36.7
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 3.6e-07 58.9 139 36.7
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 4.7e-07 58.5 145 36.6
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 1.0e-06 57.4 141 37.6
AL5G27740 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 1.4e-06 57.0 68 55.9
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 1.4e-06 57.0 150 32.7
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 1.8e-06 56.6 68 58.8
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 2.3e-06 56.2 139 38.8
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 2.3e-06 56.2 75 54.7
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 3.0e-06 55.8 69 56.5
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 5.2e-06 55.1 139 36.7
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 6.8e-06 54.7 67 58.2
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 8.9e-06 54.3 152 34.9


User provided reference genes

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