Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.3e-38 161.0 70 100.0
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 3.6e-24 114.4 71 73.2
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 4.7e-24 114.0 71 71.8
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 7.9e-24 113.2 71 73.2
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.4e-23 112.5 71 70.4
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 1.8e-23 112.1 71 71.8
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 2.3e-23 111.7 71 70.4
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.3e-23 111.7 71 70.4
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.0e-23 111.3 71 70.4
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 3.9e-23 110.9 71 70.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 3.9e-23 110.9 71 70.4
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 3.9e-23 110.9 71 70.4
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.1e-23 110.5 71 70.4
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.1e-23 110.5 71 70.4
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 6.7e-23 110.2 71 70.4
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 6.7e-23 110.2 71 71.8
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 8.8e-23 109.8 71 70.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-22 109.4 71 70.4
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.1e-22 109.4 71 70.4
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.5e-22 109.0 71 69.0
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.5e-22 109.0 71 69.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.5e-22 109.0 71 69.0
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.5e-22 109.0 71 69.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.0e-22 108.6 71 69.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.6e-22 108.2 71 67.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 2.6e-22 108.2 71 70.4
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 3.3e-22 107.8 71 69.0
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 3.3e-22 107.8 71 67.6
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.4e-22 107.5 68 72.1
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.4e-22 107.5 68 72.1
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.4e-22 107.5 71 66.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 4.4e-22 107.5 71 69.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 4.4e-22 107.5 71 66.2
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.7e-22 107.1 71 67.6
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 7.4e-22 106.7 71 66.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 9.7e-22 106.3 71 66.2
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 9.7e-22 106.3 71 66.2
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 9.7e-22 106.3 71 66.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.7e-22 106.3 71 67.6
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 9.7e-22 106.3 71 66.2
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 9.7e-22 106.3 71 66.2
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.3e-21 105.9 71 67.6
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.3e-21 105.9 71 66.2
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.3e-21 105.9 71 64.8
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.3e-21 105.9 71 64.8
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 66.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 67.6
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 66.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 66.2
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 64.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 66.2
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.7e-21 105.5 71 66.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.2e-21 105.1 70 67.1
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.2e-21 105.1 71 67.6
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.2e-21 105.1 71 64.8
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.2e-21 105.1 69 69.6
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.2e-21 105.1 71 67.6
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.8e-21 104.8 71 64.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.8e-21 104.8 71 64.8
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.8e-21 104.8 71 66.2
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.7e-21 104.4 62 75.8
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.7e-21 104.4 71 64.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.7e-21 104.4 71 64.8
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 64.8
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 64.8
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 64.8
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 64.8
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 64.8
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 64.8
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 4.8e-21 104.0 69 66.7
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 66.2
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 4.8e-21 104.0 71 63.4
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 6.3e-21 103.6 71 64.8
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 6.3e-21 103.6 71 66.2
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 6.3e-21 103.6 71 64.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 6.3e-21 103.6 71 64.8
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 8.2e-21 103.2 71 63.4
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 8.2e-21 103.2 69 66.7
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 8.2e-21 103.2 69 66.7
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 8.2e-21 103.2 71 63.4
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-20 102.8 71 63.4
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-20 102.8 69 68.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.1e-20 102.8 71 63.4
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.1e-20 102.8 71 63.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.4e-20 102.4 71 64.8
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.4e-20 102.4 69 65.2
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.8e-20 102.1 71 64.8
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.8e-20 102.1 71 66.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-20 101.7 71 63.4
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.1e-20 101.3 69 65.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.1e-20 101.3 71 63.4
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 4.1e-20 100.9 69 66.7
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.1e-20 100.9 71 63.4
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.1e-20 100.9 71 64.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 4.1e-20 100.9 70 64.3
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 4.1e-20 100.9 77 62.3
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 5.3e-20 100.5 71 63.4
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 5.3e-20 100.5 72 59.7
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 6.9e-20 100.1 71 63.4
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.9e-20 100.1 71 63.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 6.9e-20 100.1 71 63.4
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 6.9e-20 100.1 71 63.4
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 9.1e-20 99.8 70 62.9
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.2e-19 99.4 71 63.4
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.5e-19 99.0 69 62.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.0e-19 98.6 71 60.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-19 98.6 71 60.6
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.0e-19 98.6 71 60.6
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.0e-19 98.6 68 64.7
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.6e-19 98.2 71 62.0
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.6e-19 98.2 71 62.0
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.4e-19 97.8 71 62.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 5.9e-19 97.1 70 61.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 7.7e-19 96.7 70 61.4
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 7.7e-19 96.7 70 61.4
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 7.7e-19 96.7 70 61.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 7.7e-19 96.7 70 61.4
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 7.7e-19 96.7 70 61.4
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.0e-18 96.3 68 64.7
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.0e-18 96.3 68 64.7
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.7e-18 95.5 70 60.0
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.9e-18 94.7 69 62.3
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.9e-18 94.7 69 62.3
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 2.9e-18 94.7 70 60.0
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.0e-18 94.0 56 80.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.1e-17 92.8 69 58.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.4e-17 92.4 69 58.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.4e-17 92.4 69 58.0
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.4e-17 92.4 70 58.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.9e-17 92.0 69 56.5
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.9e-17 92.0 69 56.5
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.9e-17 92.0 69 56.5
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.5e-17 91.7 69 56.5
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.2e-17 90.9 69 55.1
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-16 89.4 69 56.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.6e-16 87.8 134 38.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 8.0e-16 86.7 70 55.7
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 8.0e-16 86.7 70 55.7
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 8.0e-16 86.7 70 55.7
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-15 85.9 69 52.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.8e-15 85.5 70 57.1
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.4e-14 80.9 70 50.0
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.6e-11 72.4 43 72.1
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.0e-11 72.0 70 47.1
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.3e-10 69.3 42 69.0
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.9e-09 65.5 34 73.5
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 2.5e-09 65.1 49 61.2
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 9.4e-09 63.2 49 59.2
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.2e-08 62.8 70 41.4
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 6.1e-08 60.5 47 59.6
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.0e-07 59.7 69 37.7


User provided reference genes

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