Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.8e-54 215.7 112 100.0
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 5.1e-49 197.6 112 90.2
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.2e-34 149.8 104 77.9
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-26 122.9 105 65.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.9e-25 118.2 101 70.3
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.0e-24 115.9 102 66.7
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.8e-23 112.1 102 64.7
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.7e-23 111.7 94 60.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.8e-23 111.3 102 64.7
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 6.3e-23 110.9 104 64.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.1e-22 108.2 108 55.6
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 5.3e-22 107.8 107 53.3
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.5e-21 105.1 107 57.9
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.5e-21 105.1 107 57.0
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.0e-20 103.6 104 57.7
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 3.8e-20 101.7 103 60.2
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.5e-19 99.8 106 53.8
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.5e-19 99.8 105 55.2
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.9e-19 99.4 106 59.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.5e-19 99.0 102 59.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.2e-19 98.6 112 55.4
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.2e-19 98.2 104 58.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-19 98.2 106 58.5
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.2e-19 97.4 106 58.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.6e-18 96.3 102 59.8
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.1e-18 95.9 103 59.2
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.1e-18 95.9 96 58.3
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.1e-18 95.9 102 58.8
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 3.6e-18 95.1 101 56.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.7e-18 94.7 91 60.4
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.0e-18 94.0 105 56.2
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.0e-18 94.0 105 58.1
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.4e-17 93.2 99 52.5
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.8e-17 92.8 105 56.2
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 4.0e-17 91.7 106 50.9
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.0e-17 91.7 105 57.1
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.2e-17 91.3 97 54.6
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.2e-17 91.3 91 56.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 6.7e-17 90.9 97 51.5
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.8e-17 90.5 96 57.3
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.5e-16 89.7 97 52.6
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.6e-16 89.0 97 54.6
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 5.7e-16 87.8 79 63.3
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 5.7e-16 87.8 97 52.6
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 5.7e-16 87.8 104 52.9
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.7e-16 87.8 102 53.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 7.5e-16 87.4 97 53.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.8e-15 85.5 105 51.4
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.7e-15 85.1 94 54.3
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.7e-15 85.1 105 49.5
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.8e-14 82.8 92 54.3
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.4e-14 82.4 93 55.9
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.1e-14 82.0 94 52.1
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.1e-14 81.6 97 56.7
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.3e-14 81.3 104 50.0
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.0e-13 79.3 105 51.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.7e-13 79.0 93 51.6
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.7e-13 79.0 102 51.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 3.5e-13 78.6 99 46.5
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.5e-13 78.6 97 50.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.9e-13 77.8 103 48.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.9e-13 77.8 94 52.1
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.9e-13 77.8 88 55.7
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 7.7e-13 77.4 104 53.8
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.0e-12 77.0 83 50.6
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.3e-12 76.6 99 51.5
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.7e-12 76.3 91 49.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.8e-12 75.1 95 48.4
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.5e-11 73.2 92 50.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-11 73.2 92 50.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-11 73.2 92 50.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.9e-11 72.8 101 46.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.2e-11 71.6 92 48.9
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.2e-11 71.6 92 50.0
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 5.5e-11 71.2 94 48.9
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.6e-10 69.7 107 43.9
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.6e-10 69.7 99 45.5
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.1e-10 69.3 91 51.6
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.1e-10 69.3 83 53.0
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.7e-10 68.9 91 50.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 6.1e-10 67.8 101 45.5
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.0e-09 67.0 83 56.6
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 86 53.5
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.3e-09 65.9 100 44.0
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.3e-09 65.9 81 53.1
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.0e-09 65.5 110 40.0
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 3.0e-09 65.5 105 40.0
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.0e-09 65.1 80 52.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 6.8e-09 64.3 41 75.6
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 6.8e-09 64.3 113 42.5
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 8.8e-09 63.9 72 52.8
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 8.8e-09 63.9 72 52.8
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 8.8e-09 63.9 72 52.8
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.8e-09 63.9 88 51.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.2e-08 63.5 67 52.2
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 84 46.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.0e-08 62.8 72 52.8
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.4e-08 62.0 72 51.4
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.4e-08 62.0 72 51.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 52.1
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.4e-08 61.6 102 45.1
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 7.5e-08 60.8 87 43.7
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 7.5e-08 60.8 95 44.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 80 43.8
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-07 59.7 66 51.5
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.7e-07 59.7 113 40.7
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.2e-07 59.3 71 46.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 96 39.6
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 96 39.6
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.7e-07 58.5 70 54.3
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 3.7e-07 58.5 86 40.7
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 78 50.0
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 4.8e-07 58.2 72 52.8
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.8e-07 58.2 67 52.2
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-07 58.2 78 48.7
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 6.3e-07 57.8 68 52.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 6.3e-07 57.8 58 51.7
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 8.3e-07 57.4 81 49.4
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 8.3e-07 57.4 79 49.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 95 40.0
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-06 57.0 52 61.5
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.1e-06 57.0 67 50.7
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.4e-06 56.6 98 41.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 67 52.2
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 66 50.0
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 1.8e-06 56.2 59 49.2
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.8e-06 56.2 59 49.2
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.8e-06 56.2 59 49.2
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.8e-06 56.2 59 49.2
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 1.8e-06 56.2 59 49.2
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.8e-06 56.2 79 49.4
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.4e-06 55.8 71 52.1
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.4e-06 55.8 70 51.4
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.4e-06 55.8 78 50.0
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 3.1e-06 55.5 97 42.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-06 55.5 81 46.9
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-06 55.5 71 47.9
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 4.1e-06 55.1 100 40.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.1e-06 55.1 103 37.9
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.1e-06 55.1 71 49.3
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.4e-06 54.7 78 47.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 5.4e-06 54.7 62 48.4
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.4e-06 54.7 52 53.8
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 7.0e-06 54.3 75 50.7
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.0e-06 54.3 105 38.1
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 9.1e-06 53.9 42 64.3
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 9.1e-06 53.9 42 64.3


User provided reference genes

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