Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.6e-150 535.4 276 100.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.1e-140 501.9 278 94.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.2e-139 500.0 278 93.9
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.7e-74 281.2 292 61.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.3e-64 250.8 294 56.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 4.8e-56 222.2 267 55.1
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 6.2e-56 221.9 267 55.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.8e-53 212.6 322 45.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 7.9e-51 204.9 328 43.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 8.7e-50 201.4 330 42.7
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.3e-48 197.6 342 43.3
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.2e-48 194.9 297 43.4
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-47 194.5 297 43.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 3.8e-45 186.0 351 38.7
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 5.0e-45 185.7 313 41.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 8.5e-45 184.9 328 43.0
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.9e-44 183.7 322 39.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.2e-44 182.6 345 39.7
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.6e-43 180.6 300 42.0
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 6.1e-43 178.7 306 41.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 7.9e-43 178.3 306 41.8
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 7.9e-43 178.3 335 38.5
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.4e-42 177.6 333 41.7
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.8e-42 177.2 347 40.6
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.8e-42 177.2 319 41.7
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.0e-42 176.4 349 39.3
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 8.8e-42 174.9 378 35.4
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-41 174.5 326 39.6
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.3e-41 172.9 357 40.1
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.3e-41 172.6 356 37.9
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 7.4e-41 171.8 331 38.4
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.7e-41 171.4 350 37.4
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.7e-40 170.6 349 37.5
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.8e-40 169.9 345 38.3
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.8e-40 169.9 332 38.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 6.3e-40 168.7 292 41.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-39 167.2 355 40.6
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.8e-39 167.2 353 38.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.4e-39 166.8 361 36.3
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.4e-39 166.8 279 38.7
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.1e-39 166.4 348 40.2
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.1e-39 166.0 366 38.0
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.2e-38 164.5 348 37.1
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.2e-38 164.5 342 37.4
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.0e-38 163.7 369 35.0
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.4e-38 162.9 304 38.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.4e-38 162.9 295 41.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.9e-38 162.2 296 41.9
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 7.7e-38 161.8 368 35.6
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.3e-37 161.0 348 37.6
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.2e-37 160.2 336 37.2
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-37 160.2 334 38.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.2e-37 160.2 325 37.8
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.2e-37 160.2 324 38.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.2e-37 160.2 328 37.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.9e-37 159.8 371 36.7
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 3.8e-37 159.5 379 36.1
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 6.5e-37 158.7 329 39.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.5e-37 158.7 324 38.6
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.4e-36 157.5 363 36.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.2e-36 156.4 241 43.6
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.2e-36 156.4 361 34.6
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.5e-36 155.6 366 35.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 9.4e-36 154.8 374 36.1
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 9.4e-36 154.8 336 35.1
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-35 154.5 334 36.5
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.6e-35 154.1 361 36.3
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.6e-35 154.1 335 37.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 3.6e-35 152.9 382 36.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 7.9e-35 151.8 367 34.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.4e-34 151.0 334 40.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.8e-34 150.6 237 43.5
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.0e-34 149.8 361 34.1
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.0e-34 149.8 361 34.1
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.9e-34 149.4 334 37.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 5.1e-34 149.1 269 40.5
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.1e-34 149.1 328 38.1
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.0e-33 147.1 286 37.8
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.6e-33 146.7 343 35.3
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 7.4e-33 145.2 286 38.5
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.7e-32 144.1 312 38.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.7e-32 144.1 259 41.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 3.7e-32 142.9 364 34.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-31 140.2 331 36.3
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.4e-31 140.2 396 33.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.5e-30 137.5 134 58.2
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.0e-30 137.1 401 33.9
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 5.9e-30 135.6 241 40.2
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.0e-29 134.8 130 56.9
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.3e-29 134.4 372 32.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.8e-29 132.9 323 34.4
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.5e-29 132.1 271 36.9
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.5e-29 131.7 337 31.5
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.1e-28 131.3 286 35.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.5e-28 130.2 260 40.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.2e-28 128.6 334 34.4
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.2e-28 128.6 274 36.9
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.2e-28 128.6 274 36.9
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.1e-27 125.6 264 38.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 8.0e-27 125.2 303 34.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-26 123.6 297 34.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.0e-26 123.2 335 35.2
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 8.8e-26 121.7 291 34.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-25 120.9 277 35.7
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.0e-25 120.6 294 35.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.6e-25 120.2 195 42.1
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 7.4e-25 118.6 286 34.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 7.4e-25 118.6 393 30.3
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 9.7e-25 118.2 286 34.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 9.7e-25 118.2 286 34.6
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.2e-24 117.1 319 33.2
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.8e-24 116.7 314 36.3
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.7e-24 116.3 165 42.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 4.8e-24 115.9 273 35.2
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.4e-23 113.6 185 39.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.4e-23 113.6 436 29.4
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 5.3e-23 112.5 166 43.4
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.0e-23 112.1 151 46.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 9.1e-23 111.7 222 36.5
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.1e-23 111.7 316 32.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-22 110.9 290 31.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.5e-21 105.5 133 48.1
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 6.5e-21 105.5 137 49.6
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 6.5e-21 105.5 108 55.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 8.5e-21 105.1 115 53.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 8.5e-21 105.1 115 53.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 8.5e-21 105.1 144 45.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.1e-20 104.8 123 51.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-20 104.4 111 51.4
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-20 104.4 114 52.6
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.2e-20 103.2 281 32.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.2e-20 102.8 106 52.8
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.2e-20 102.8 106 52.8
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.2e-20 102.8 174 43.7
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.2e-20 102.8 174 43.7
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 9.4e-20 101.7 188 40.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-19 100.5 279 32.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.7e-19 100.1 121 46.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 3.6e-19 99.8 273 29.3
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 6.1e-19 99.0 276 31.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.0e-19 98.6 73 69.9
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.0e-19 98.6 225 35.1
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.0e-18 98.2 125 44.8
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.0e-18 98.2 73 69.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.8e-18 97.4 274 31.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.0e-18 96.7 173 38.2
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.0e-18 96.3 222 35.6
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.0e-17 94.0 275 33.5
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.4e-17 92.8 276 34.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 7.5e-17 92.0 284 29.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 7.5e-17 92.0 284 29.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 7.5e-17 92.0 284 29.2
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 7.5e-17 92.0 263 33.5
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.7e-16 90.9 251 33.9
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 3.7e-16 89.7 348 29.3
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 8.3e-16 88.6 240 32.9
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.8e-15 87.4 278 29.5
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 5.3e-15 85.9 136 39.7
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.7e-14 83.6 111 44.1
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.9e-14 82.4 141 39.0
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 7.7e-14 82.0 114 41.2
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.7e-13 80.9 92 43.5
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.1e-12 78.2 279 30.1
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.8e-10 70.9 292 28.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.8e-09 65.1 43 72.1
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.7e-08 63.2 241 24.5
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.8e-07 60.8 188 31.4
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.8e-07 60.8 220 26.4


User provided reference genes

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