Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 1.3e-120 436.4 219 100.0
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.3e-93 346.7 181 93.9
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 1.7e-93 346.3 181 95.0
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 3.9e-93 345.1 181 95.0
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.1e-92 343.6 181 93.4
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 3.3e-92 342.0 181 92.8
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 1.5e-89 333.2 181 91.2
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 1.8e-69 266.5 212 65.1
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 3.1e-66 255.8 181 69.1
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 2.6e-65 252.7 181 66.3
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 4.6e-62 241.9 223 58.7
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 8.7e-61 237.7 215 59.1
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 8.7e-61 237.7 215 59.1
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 9.0e-58 227.6 184 58.7
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 2.0e-57 226.5 215 59.5
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 2.6e-57 226.1 215 59.5
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 3.4e-57 225.7 184 59.2
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 5.9e-57 224.9 215 55.8
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 7.6e-57 224.6 213 57.7
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 1.3e-56 223.8 184 61.4
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 2.9e-56 222.6 182 61.5
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 2.9e-56 222.6 174 65.5
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 5.0e-56 221.9 184 59.8
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 6.5e-56 221.5 215 56.3
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.4e-55 220.3 216 53.7
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 1.4e-55 220.3 184 58.7
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 1.9e-55 219.9 184 61.4
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 1.9e-55 219.9 182 60.4
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 3.2e-55 219.2 215 53.5
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 4.2e-55 218.8 215 54.9
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 5.5e-55 218.4 182 59.3
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 5.5e-55 218.4 216 55.6
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 7.2e-55 218.0 184 59.2
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 7.2e-55 218.0 216 52.3
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 9.3e-55 217.6 184 58.7
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.2e-54 217.2 183 60.1
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 2.1e-54 216.5 180 62.2
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 2.1e-54 216.5 181 60.2
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 2.7e-54 216.1 181 56.9
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 4.6e-54 215.3 213 55.4
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 7.9e-54 214.5 144 70.8
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 7.9e-54 214.5 176 60.2
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 1.0e-53 214.2 184 58.7
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.0e-53 214.2 183 59.6
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.8e-53 213.4 214 53.7
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 2.3e-53 213.0 183 60.7
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 2.3e-53 213.0 183 60.7
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 2.3e-53 213.0 184 58.7
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 3.0e-53 212.6 214 53.3
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 3.0e-53 212.6 183 59.0
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 3.9e-53 212.2 184 57.6
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 5.1e-53 211.8 180 61.1
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 8.7e-53 211.1 160 66.9
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 8.7e-53 211.1 220 50.9
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 1.1e-52 210.7 174 61.5
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 1.5e-52 210.3 184 60.3
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 4.3e-52 208.8 183 56.8
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 4.3e-52 208.8 184 57.1
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 5.7e-52 208.4 210 55.2
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 1.3e-51 207.2 184 56.0
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 2.2e-51 206.5 184 56.5
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 2.8e-51 206.1 178 58.4
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 6.3e-51 204.9 182 57.1
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 5.3e-50 201.8 209 53.1
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 1.2e-49 200.7 183 55.2
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 1.5e-49 200.3 183 55.7
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 3.4e-49 199.1 184 56.0
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 1.0e-48 197.6 173 56.1
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 1.4e-47 193.7 181 53.6
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 2.5e-47 193.0 184 54.3
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 2.5e-47 193.0 177 57.6
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 3.2e-47 192.6 178 57.9
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 7.9e-46 188.0 250 46.0
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 1.0e-45 187.6 183 53.0
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 4.4e-44 182.2 176 52.3
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 5.7e-44 181.8 176 52.3
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.7e-43 180.3 176 51.1
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 1.8e-42 176.8 176 50.6
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 4.1e-42 175.6 176 51.1
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 6.9e-42 174.9 176 50.6
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 1.5e-41 173.7 176 50.6
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 2.6e-41 172.9 176 49.4
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 5.9e-41 171.8 175 53.7
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 5.5e-39 165.2 209 45.0
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 6.1e-38 161.8 202 44.1
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 1.0e-37 161.0 203 43.8
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 1.1e-36 157.5 183 42.1
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 2.6e-36 156.4 181 43.6
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.1e-34 151.0 113 66.4
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 2.4e-34 149.8 171 40.9
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 2.0e-33 146.7 103 68.9
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 3.5e-33 146.0 106 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 3.3e-28 129.4 190 38.9
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 5.7e-28 128.6 213 35.7
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 9.4e-23 111.3 102 52.9
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 9.4e-23 111.3 208 34.6
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 7.5e-20 101.7 136 46.3
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 8.0e-14 81.6 81 50.6
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 9.8e-12 74.7 140 32.9
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 4.5e-09 65.9 81 43.2
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.7e-08 63.9 103 36.9
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 8.6e-08 61.6 181 28.2
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 7.3e-07 58.5 181 27.6


User provided reference genes

Program Settings