Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 3.8e-188 661.4 341 100.0
Solyc03g059470.1 Solanum lycopersicum HOM05D003787 ORTHO05D001736 4.6e-133 478.4 343 80.8
CAN.G83.4 Capsicum annuum HOM05D003787 ORTHO05D001736 5.3e-105 385.2 362 65.5
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.6e-99 365.2 362 63.0
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.5e-94 349.7 346 64.7
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 2.5e-91 339.7 371 58.2
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 7.5e-59 231.9 365 47.1
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 1.9e-46 190.7 356 42.7
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.5e-46 190.3 370 43.0
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 4.2e-46 189.5 375 41.6
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.0e-44 184.9 352 41.5
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.4e-41 173.7 348 43.7
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 7.8e-40 168.7 348 39.7
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.1e-38 164.9 218 52.8
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 8.0e-37 158.7 370 37.8
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.4e-27 126.3 296 37.5
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 5.8e-27 125.9 347 35.2
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 1.3e-26 124.8 319 37.6
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.2e-26 124.0 338 36.4
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.5e-24 116.7 345 35.9
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.1e-22 111.7 316 35.1
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 3.3e-22 110.2 281 34.9
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 8.1e-21 105.5 269 37.2
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 6.8e-20 102.4 298 33.6
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 1.2e-19 101.7 298 33.6
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 1.5e-19 101.3 307 36.5
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.6e-19 100.5 337 33.5
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.4e-19 99.8 329 34.3
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 1.3e-18 98.2 299 34.8
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.1e-17 95.1 351 33.0
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 4.1e-17 93.2 332 31.9
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 4.1e-17 93.2 292 33.2
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 9.2e-17 92.0 289 32.9
unitig_899.g15099 Utricularia gibba HOM05D003787 ORTHO05D001736 1.2e-16 91.7 298 32.9
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 6.0e-16 89.4 335 32.8
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 1.5e-14 84.7 331 30.5
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 1.6e-13 81.3 322 32.0
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.1e-13 80.9 328 29.0
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 2.8e-13 80.5 261 31.8
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 8.1e-13 79.0 362 29.0
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 8.1e-13 79.0 290 30.0
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 6.8e-12 75.9 290 30.7
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 6.8e-12 75.9 351 27.1
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 6.8e-12 75.9 102 48.0
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 1.2e-11 75.1 268 30.6
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 1.5e-11 74.7 354 27.4
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 2.0e-11 74.3 305 32.5
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 3.4e-11 73.6 360 29.4
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 4.4e-11 73.2 377 30.8
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 1.7e-10 71.2 270 29.3
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 1.7e-10 71.2 310 29.4
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.8e-10 70.1 293 28.0
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 8.4e-10 68.9 323 29.7
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 8.4e-10 68.9 331 28.4
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 1.1e-09 68.6 130 43.1
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.1e-09 68.6 331 26.3
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 1.4e-09 68.2 354 29.7
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.4e-09 68.2 94 48.9
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 2.4e-09 67.4 345 27.5
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 3.2e-09 67.0 255 31.0
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 4.1e-09 66.6 117 40.2
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 5.4e-09 66.2 315 30.2
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 7.1e-09 65.9 86 51.2
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 9.2e-09 65.5 356 28.7
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 1.2e-08 65.1 120 39.2
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 2.1e-08 64.3 258 29.8
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 2.7e-08 63.9 68 54.4
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 2.7e-08 63.9 125 36.0
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 3.5e-08 63.5 138 38.4
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 4.6e-08 63.2 318 29.2
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 4.6e-08 63.2 360 30.0
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 7.8e-08 62.4 327 28.1
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 7.8e-08 62.4 330 27.3
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 7.8e-08 62.4 314 29.9
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 7.8e-08 62.4 137 38.7
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 7.8e-08 62.4 366 29.5
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 7.8e-08 62.4 362 26.5
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 7.8e-08 62.4 338 28.4
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.0e-07 62.0 338 29.3
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.0e-07 62.0 331 27.5
MSTRG.755 Avicennia marina HOM05D011975 ORTHO05D001736 1.3e-07 61.6 88 45.5
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 1.3e-07 61.6 134 35.1
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 1.7e-07 61.2 243 30.0
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 1.7e-07 61.2 197 33.5
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 2.3e-07 60.8 246 30.9
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 2.3e-07 60.8 302 28.1
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 2.3e-07 60.8 327 28.4
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.3e-07 60.8 201 33.3
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 3.9e-07 60.1 277 29.2
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.9e-07 60.1 321 26.8
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.9e-07 60.1 323 29.1
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 3.9e-07 60.1 291 30.9
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 5.1e-07 59.7 245 31.8
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 5.1e-07 59.7 259 30.9
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 5.1e-07 59.7 347 27.1
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 5.1e-07 59.7 329 28.9
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 5.1e-07 59.7 148 35.8
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 5.1e-07 59.7 263 28.5
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 6.6e-07 59.3 67 55.2
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 6.6e-07 59.3 239 31.8
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 6.6e-07 59.3 99 43.4
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.6e-07 59.3 213 32.9
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 6.6e-07 59.3 336 28.0
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 8.6e-07 58.9 160 35.6
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 8.6e-07 58.9 328 31.1
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.1e-06 58.5 253 29.6
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-06 58.5 115 40.9
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 1.5e-06 58.2 204 29.9
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 1.5e-06 58.2 286 28.7
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 1.5e-06 58.2 311 28.6
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.5e-06 58.2 330 26.4
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 1.9e-06 57.8 377 28.6
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 1.9e-06 57.8 249 30.1
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.9e-06 57.8 289 26.0
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.9e-06 57.8 249 31.3
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.9e-06 57.8 199 30.2
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.9e-06 57.8 171 35.1
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.5e-06 57.4 56 57.1
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 2.5e-06 57.4 252 29.8
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 2.5e-06 57.4 97 43.3
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 3.3e-06 57.0 250 30.8
Lsat_1_v5_gn_3_97381 Lactuca sativa HOM05D003787 ORTHO05D001736 3.3e-06 57.0 151 34.4
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 3.3e-06 57.0 69 53.6
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 5.6e-06 56.2 231 30.7
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 5.6e-06 56.2 77 50.6
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 5.6e-06 56.2 252 29.0
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 5.6e-06 56.2 55 58.2
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 7.3e-06 55.8 62 50.0
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 7.3e-06 55.8 62 50.0
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 7.3e-06 55.8 54 57.4
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 7.3e-06 55.8 100 39.0
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 9.6e-06 55.5 94 42.6
Medtr5g045480 Medicago truncatula HOM05D003787 ORTHO05D001736 9.6e-06 55.5 66 54.5
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 9.6e-06 55.5 300 26.3
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 9.6e-06 55.5 243 28.8
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 9.6e-06 55.5 326 29.4


User provided reference genes

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