Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 7.8e-229 797.0 457 100.0
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 6.4e-223 777.3 456 97.4
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 3.0e-220 768.5 456 96.1
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 1.7e-207 726.1 452 92.5
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.0e-204 716.8 445 87.0
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 5.6e-203 711.1 482 81.3
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 1.4e-201 706.4 458 83.6
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 6.9e-169 597.8 462 69.7
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 9.1e-169 597.4 459 71.9
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 2.9e-167 592.4 463 71.1
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 5.5e-166 588.2 463 69.3
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 2.7e-165 585.9 462 69.3
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 6.1e-165 584.7 463 68.7
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 3.3e-163 578.9 463 67.8
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 2.8e-162 575.9 463 68.0
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 4.8e-162 575.1 463 68.5
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 6.3e-162 574.7 469 67.2
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 6.3e-162 574.7 462 68.8
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 1.4e-161 573.5 463 68.0
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 5.9e-160 568.2 462 67.1
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 7.7e-160 567.8 464 67.0
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 2.9e-159 565.8 462 68.8
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 3.8e-159 565.5 462 68.8
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.1e-158 563.9 462 67.3
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 1.4e-158 563.5 465 67.5
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 2.5e-158 562.8 462 67.3
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 4.2e-158 562.0 463 66.1
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 7.2e-158 561.2 463 67.0
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 7.2e-158 561.2 465 67.5
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.1e-157 559.7 455 70.3
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 7.9e-157 557.8 463 66.3
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.0e-156 557.4 454 70.3
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 1.8e-156 556.6 462 67.5
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 2.3e-156 556.2 462 67.7
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.3e-156 556.2 461 67.2
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 3.0e-156 555.8 464 67.0
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 2.0e-155 553.1 464 66.4
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 4.4e-155 552.0 459 67.5
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 7.4e-155 551.2 462 66.9
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 1.3e-154 550.4 461 66.6
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 1.7e-154 550.1 466 67.6
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 1.1e-153 547.4 463 65.7
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 1.8e-153 546.6 463 65.7
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 2.4e-153 546.2 455 67.5
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 2.4e-153 546.2 465 65.6
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 3.1e-153 545.8 462 67.1
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.6e-152 543.5 457 65.0
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 4.5e-152 542.0 465 66.0
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 7.7e-152 541.2 463 64.1
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 1.0e-151 540.8 463 65.2
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 2.2e-151 539.7 465 64.7
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 2.2e-151 539.7 465 64.3
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 2.2e-151 539.7 466 65.0
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 2.9e-151 539.3 457 64.6
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 1.1e-150 537.3 466 64.6
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 3.2e-150 535.8 466 63.7
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 3.2e-150 535.8 466 63.7
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 7.2e-150 534.6 464 64.9
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 9.4e-150 534.3 459 65.8
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.1e-149 533.1 465 65.2
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 6.1e-149 531.6 462 63.2
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 6.1e-149 531.6 465 65.8
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 8.0e-149 531.2 465 64.9
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 2.3e-148 529.6 464 63.6
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.0e-148 529.3 465 64.7
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 6.7e-148 528.1 463 64.4
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 6.7e-148 528.1 465 63.0
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.0e-147 526.6 463 64.1
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 7.5e-147 524.6 422 67.3
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 4.8e-146 521.9 466 62.7
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 1.8e-145 520.0 467 62.1
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.8e-145 520.0 467 60.8
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 9.1e-145 517.7 458 63.8
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 3.2e-142 509.2 468 59.8
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 4.2e-142 508.8 470 61.9
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 1.2e-139 500.7 456 59.9
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 7.5e-139 498.0 496 57.7
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 9.8e-139 497.7 467 60.8
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 1.1e-137 494.2 467 60.2
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 1.4e-137 493.8 450 62.2
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 4.1e-137 492.3 461 60.1
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 9.1e-137 491.1 466 59.4
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.7e-135 486.9 462 60.2
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 2.9e-135 486.1 461 59.9
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 4.4e-131 472.2 454 55.1
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.3e-130 470.7 454 59.3
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.2e-130 469.9 463 61.3
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 3.7e-130 469.2 465 57.0
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 4.9e-130 468.8 464 57.5
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 1.8e-129 466.8 468 57.9
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 1.8e-129 466.8 468 57.9
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 5.4e-129 465.3 464 57.1
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 1.6e-128 463.8 464 57.8
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 3.5e-128 462.6 467 56.1
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 3.5e-128 462.6 469 56.9
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 3.5e-128 462.6 469 56.9
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 5.9e-128 461.8 465 56.3
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.3e-127 460.7 465 55.3
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.3e-127 460.7 463 60.3
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 2.9e-127 459.5 469 56.7
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 5.0e-127 458.8 463 59.6
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 1.9e-126 456.8 465 61.7
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 2.8e-125 453.0 470 56.8
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 1.0e-124 451.1 470 55.5
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 1.0e-124 451.1 469 53.1
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 1.8e-124 450.3 463 52.3
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 1.8e-124 450.3 454 51.8
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 2.3e-124 449.9 460 57.8
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 2.3e-124 449.9 465 60.9
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 2.3e-124 449.9 473 52.6
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 4.4e-123 445.7 470 56.6
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 4.4e-123 445.7 470 56.6
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 7.5e-123 444.9 468 53.6
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.7e-122 443.7 465 60.0
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 2.2e-122 443.4 450 59.8
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 9.2e-121 438.0 460 53.5
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.3e-119 434.1 369 65.9
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 3.1e-116 422.9 463 54.2
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 2.0e-112 410.2 463 52.7
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 4.3e-110 402.5 296 70.9
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 3.2e-105 386.3 443 52.1
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 4.1e-105 386.0 283 70.7
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.6e-96 355.9 486 49.6
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 1.9e-94 350.5 284 64.8
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 3.6e-93 346.3 279 66.7
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 5.2e-92 342.4 305 65.9
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 1.8e-84 317.4 488 42.4
CAN.G293.1 Capsicum annuum HOM05D003450 ORTHO05D004150 2.6e-83 313.5 210 79.5
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 4.9e-82 309.3 499 41.1
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.1e-81 308.1 299 62.5
CSS0043437 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.9e-81 307.4 237 69.6
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 7.9e-80 302.0 479 40.7
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 6.2e-77 292.4 466 41.0
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 8.1e-77 292.0 448 46.0
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 8.7e-71 271.9 461 39.5
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 8.2e-69 265.4 188 70.7
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.0e-68 263.1 262 60.7
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 7.1e-65 252.3 199 65.8
RcHm_v2.0_Chr2g0173251 Rosa chinensis HOM05D003450 ORTHO05D004150 1.4e-57 228.0 244 52.9
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 2.5e-54 217.2 466 35.6
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 5.9e-51 206.1 142 71.1
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 5.7e-46 189.5 248 48.0
TAR623G1393 Trochodendron aralioides HOM05D003450 ORTHO05D004150 5.7e-46 189.5 182 62.1
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 9.7e-46 188.7 462 35.1
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 2.8e-45 187.2 214 52.8
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.4e-41 174.9 119 72.3
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 8.0e-40 169.1 116 67.2
Atru.chr6.2427 Acer truncatum HOM05D003450 ORTHO05D004150 4.4e-38 163.3 168 58.3
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 9.7e-38 162.2 177 53.1
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 9.7e-38 162.2 177 53.1
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 4.8e-37 159.8 287 43.2
Zm00001eb068810 Zea mays HOM05D003450 ORTHO05D004150 7.7e-35 152.5 168 53.6
Zm00001eb191840 Zea mays HOM05D003450 ORTHO05D004150 1.0e-34 152.1 168 53.0
Zm00001eb190000 Zea mays HOM05D003450 ORTHO05D004150 2.2e-34 151.0 168 52.4
Zm00001eb162870 Zea mays HOM05D003450 ORTHO05D004150 5.0e-34 149.8 168 52.4
Zm00001eb170860 Zea mays HOM05D003450 ORTHO05D004150 1.5e-33 148.3 168 52.4
Zm00001eb235100 Zea mays HOM05D003450 ORTHO05D004150 1.5e-33 148.3 168 51.8
FAN18G3542 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.7e-32 143.3 155 60.0
Sc07g0005170 Simmondsia chinensis HOM05D003450 ORTHO05D004150 3.3e-30 137.1 107 74.8
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 2.4e-28 131.0 469 27.7
CSS0010567 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.0e-27 127.9 106 72.6
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 1.7e-26 124.8 493 27.6
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 5.0e-26 123.2 115 52.2
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 2.5e-25 120.9 229 38.4
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 2.0e-22 111.3 656 23.6
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 3.5e-19 100.5 94 57.4
Atru.chr6.2428 Acer truncatum HOM05D003450 ORTHO05D004150 7.7e-19 99.4 72 79.2
Aqoxy2G03587 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 3.6e-16 90.5 92 55.4
Zm00001eb367390 Zea mays HOM05D003450 ORTHO05D004150 2.3e-15 87.8 123 43.1
TPR.G33244 Trifolium pratense HOM05D003450 ORTHO05D004150 6.8e-15 86.3 115 49.6
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 3.6e-08 63.9 56 51.8
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 3.4e-06 57.4 51 52.9


User provided reference genes

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