Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.4e-201 706.1 364 100.0
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.5e-187 659.4 364 94.2
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.4e-187 658.3 364 94.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 1.2e-184 649.8 364 92.9
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.1e-183 644.4 363 90.9
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.2e-181 639.0 363 91.5
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 5.7e-174 614.4 365 87.7
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-121 440.7 369 67.2
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 7.3e-121 438.0 369 65.3
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 9.5e-121 437.6 370 67.3
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.6e-120 436.8 369 66.9
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 8.1e-120 434.5 368 64.9
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 6.8e-119 431.4 372 64.5
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.2e-118 430.6 369 66.1
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.0e-118 429.9 374 64.7
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 5.8e-118 428.3 370 64.3
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.3e-117 427.2 369 63.7
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 8.4e-117 424.5 364 62.6
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.6e-115 418.7 366 63.1
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 7.8e-115 417.9 368 62.0
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.0e-114 417.5 368 61.4
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.3e-114 417.2 366 61.7
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.3e-114 417.2 368 63.0
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 3.9e-114 415.6 367 62.9
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 5.1e-114 415.2 366 62.8
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.1e-113 414.1 376 62.0
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.5e-113 412.9 367 62.7
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 7.3e-113 411.4 405 58.3
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.6e-113 411.0 366 62.8
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.3e-112 410.6 366 62.8
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 2.1e-112 409.8 371 61.5
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.8e-112 409.5 369 61.5
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.8e-112 409.5 373 61.7
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 2.8e-112 409.5 367 59.7
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.6e-112 409.1 366 62.3
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 4.8e-112 408.7 364 61.8
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 6.2e-112 408.3 373 62.2
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 6.2e-112 408.3 367 63.8
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 8.1e-112 407.9 371 61.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.1e-111 407.5 374 61.2
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 3.1e-111 406.0 368 60.1
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.6e-110 402.9 367 60.8
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 3.4e-110 402.5 392 58.9
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 4.4e-110 402.1 374 61.0
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.3e-109 400.6 374 59.6
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 2.2e-109 399.8 370 61.1
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 3.8e-109 399.1 374 60.4
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 3.8e-109 399.1 377 59.9
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 6.4e-109 398.3 368 61.1
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 6.4e-109 398.3 404 58.7
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 8.4e-109 397.9 368 61.7
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.1e-108 397.5 368 61.1
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.9e-108 396.7 376 59.8
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.9e-108 396.7 365 60.8
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 3.2e-108 396.0 370 60.5
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 2.1e-107 393.3 368 60.3
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.0e-106 391.0 367 60.2
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.7e-106 390.2 355 61.4
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 3.0e-106 389.4 394 57.6
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 5.1e-106 388.7 368 59.2
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 2.5e-105 386.3 373 60.3
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.1e-104 383.3 373 57.9
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 2.8e-104 382.9 373 58.4
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 3.6e-104 382.5 368 58.7
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 6.2e-104 381.7 372 59.4
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.8e-103 380.2 366 57.7
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.4e-103 379.8 370 59.2
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 4.0e-103 379.0 378 56.9
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 2.0e-102 376.7 367 59.4
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 7.6e-102 374.8 367 58.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.3e-101 374.0 367 57.2
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.9e-100 370.2 410 51.7
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.4e-100 369.8 366 57.1
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 4.2e-100 369.0 378 56.6
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 7.1e-100 368.2 378 56.6
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.2e-99 367.5 409 51.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.6e-99 365.5 372 58.6
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 8.7e-98 361.3 387 55.0
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 2.5e-97 359.8 383 55.6
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 4.8e-96 355.5 350 56.9
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 8.1e-96 354.8 402 52.5
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.4e-95 354.0 385 54.3
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 9.0e-95 351.3 408 52.7
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 1.2e-94 350.9 400 53.2
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 5.8e-94 348.6 403 51.1
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.0e-93 347.8 389 52.7
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.3e-93 347.4 391 53.5
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.7e-93 347.1 363 58.7
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 3.8e-93 345.9 396 53.0
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 8.4e-93 344.7 398 52.8
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.4e-92 344.0 391 53.5
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 7.1e-92 341.7 391 52.2
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 2.1e-91 340.1 363 54.8
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 3.5e-91 339.3 402 51.7
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.3e-90 337.4 387 51.9
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.8e-90 337.0 396 51.5
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.9e-89 333.6 408 51.0
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.9e-89 333.6 405 51.9
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 2.5e-89 333.2 409 51.6
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 4.3e-89 332.4 413 50.4
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 5.7e-89 332.0 397 50.9
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.1e-87 327.8 407 51.8
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.1e-87 327.8 412 50.7
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 2.4e-87 326.6 406 51.0
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 2.0e-86 323.6 411 50.6
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 4.2e-84 315.8 310 57.4
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.2e-83 314.3 362 53.9
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.3e-82 310.1 366 51.4
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.1e-81 307.8 329 55.3
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 2.8e-80 303.1 376 51.6
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 7.2e-76 288.5 431 44.8
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 3.2e-68 263.1 278 55.4
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 8.8e-50 201.8 364 38.5
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.8e-47 194.1 299 43.1
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.4e-47 192.6 404 36.9
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 7.0e-47 192.2 480 34.2
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 3.5e-46 189.9 278 46.0
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 5.5e-44 182.6 188 54.8
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 5.5e-44 182.6 188 54.8
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 5.5e-44 182.6 188 54.8
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 9.4e-44 181.8 144 69.4
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.4e-39 167.9 367 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.9e-38 162.5 533 29.3
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 1.5e-36 157.9 144 59.7
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.2e-31 140.2 144 56.9
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 6.6e-29 132.5 395 31.9
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 2.5e-28 130.6 199 44.7
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 5.8e-25 119.4 134 51.5
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 6.4e-24 115.9 327 32.1
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.6e-19 100.1 177 38.4
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 2.0e-17 94.4 377 28.1
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.0e-17 94.4 377 28.1
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.9e-15 87.8 84 56.0
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-11 74.7 42 83.3
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 4.0e-10 70.1 109 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.2e-06 58.5 127 31.5
DCAR_031559 Daucus carota HOM05D037052 ORTHO05D177761 3.5e-06 57.0 38 71.1
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.6e-06 56.6 77 41.6


User provided reference genes

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