Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 3.1e-87 325.1 164 100.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.8e-82 309.3 164 95.1
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 5.5e-76 287.7 152 95.4
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 4.8e-56 221.5 148 77.7
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.2e-46 190.3 149 71.1
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.9e-45 185.7 129 77.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 3.8e-45 185.3 160 65.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 8.6e-45 184.1 151 66.9
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.0e-42 177.2 154 63.6
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.5e-41 173.3 149 63.8
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.6e-41 172.6 159 57.9
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.7e-40 169.9 168 56.5
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-40 169.5 168 56.5
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-40 169.5 168 56.5
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.7e-40 168.7 171 60.2
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.1e-39 167.2 150 60.7
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.4e-39 166.8 165 59.4
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.4e-39 166.8 154 60.4
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.8e-39 166.4 149 61.7
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 2.4e-39 166.0 162 59.3
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.1e-39 165.2 149 61.1
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.6e-38 161.8 153 59.5
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.3e-37 160.2 146 60.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.3e-37 160.2 165 57.0
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.3e-37 159.5 149 59.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 3.9e-37 158.7 162 56.2
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.3e-36 155.6 149 58.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.3e-36 154.5 158 59.5
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.2e-35 153.7 155 59.4
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.6e-35 153.3 165 57.0
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.6e-35 153.3 176 54.5
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.7e-35 151.8 143 56.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.7e-35 151.8 143 56.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 8.0e-35 151.0 168 55.4
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 8.0e-35 151.0 169 53.8
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-34 150.2 161 54.0
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.4e-34 150.2 158 58.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.4e-34 150.2 158 58.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.4e-34 150.2 133 63.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.8e-34 149.8 168 56.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.3e-34 149.4 166 54.2
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 5.2e-34 148.3 161 51.6
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 6.8e-34 147.9 171 52.0
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 8.9e-34 147.5 154 59.1
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 8.9e-34 147.5 170 53.5
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.0e-33 146.4 171 53.2
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.4e-33 145.6 169 53.8
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.4e-33 145.6 169 53.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 5.8e-33 144.8 150 53.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 5.8e-33 144.8 150 53.3
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 5.8e-33 144.8 181 50.8
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 9.8e-33 144.1 149 54.4
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 9.8e-33 144.1 150 58.7
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.3e-32 143.7 169 53.8
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.3e-32 143.7 150 57.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.7e-32 143.3 171 52.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.2e-32 142.9 158 53.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 2.9e-32 142.5 154 53.2
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 8.3e-32 141.0 173 50.9
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.1e-31 140.6 168 51.2
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.4e-31 140.2 171 50.9
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.9e-31 139.8 170 52.9
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.9e-31 139.8 177 50.8
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.2e-31 139.0 171 50.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 3.2e-31 139.0 151 55.6
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 9.2e-31 137.5 154 54.5
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 9.2e-31 137.5 161 51.6
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.2e-31 137.5 168 53.6
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.2e-30 137.1 151 53.0
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.6e-30 136.7 160 46.2
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.1e-30 136.3 173 49.7
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 4.6e-30 135.2 148 54.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 4.6e-30 135.2 155 52.9
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-29 134.0 153 53.6
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-29 134.0 153 53.6
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.7e-29 133.3 167 50.3
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.0e-29 132.5 150 52.7
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 8.6e-29 131.0 155 52.9
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.9e-28 129.8 150 52.0
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.5e-28 129.4 162 49.4
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 5.6e-28 128.3 167 46.7
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 9.5e-28 127.5 148 54.1
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 9.5e-28 127.5 151 53.0
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.2e-27 127.1 168 50.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 2.1e-27 126.3 169 47.9
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.8e-27 125.9 146 53.4
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.8e-27 125.9 150 51.3
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 3.6e-27 125.6 147 53.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 3.6e-27 125.6 147 53.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 3.6e-27 125.6 170 48.2
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 6.2e-27 124.8 148 52.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.8e-26 123.2 174 47.7
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 2.3e-26 122.9 153 53.6
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.1e-26 122.5 149 52.3
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.1e-26 122.5 158 48.1
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.0e-26 122.1 176 45.5
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 5.2e-26 121.7 172 47.7
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 5.2e-26 121.7 185 46.5
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.8e-26 121.3 165 47.9
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 6.8e-26 121.3 148 50.0
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 8.9e-26 120.9 174 44.3
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.2e-25 120.6 136 53.7
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.2e-25 120.6 161 51.6
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.0e-25 119.8 166 48.8
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.0e-25 119.8 178 46.1
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.4e-25 119.0 171 45.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 4.4e-25 118.6 175 46.9
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 9.9e-25 117.5 148 48.6
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.7e-24 116.7 166 46.4
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 3.7e-24 115.5 158 48.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 6.4e-24 114.8 145 48.3
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.1e-23 112.1 146 48.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 4.1e-23 112.1 158 45.6
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 5.4e-23 111.7 172 45.3
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.1e-22 109.8 162 48.1
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 3.5e-22 109.0 147 47.6
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.5e-20 103.6 162 43.2
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.6e-19 100.1 165 42.4
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.1e-19 99.8 150 44.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.8e-19 99.4 134 50.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.8e-19 99.4 110 54.5
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-17 92.8 94 56.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-17 92.8 94 56.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-17 92.8 94 56.4
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.4e-17 92.4 144 45.1
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.6e-14 83.6 162 38.3
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-14 83.6 125 52.0
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.6e-14 82.0 108 40.7
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 6.0e-14 81.6 111 45.0
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 7.8e-14 81.3 111 45.0
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.3e-13 79.7 61 65.6
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.0e-13 79.3 121 50.4
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.0e-13 79.3 121 50.4
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 3.9e-13 79.0 197 37.6
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.1e-13 78.6 144 40.3
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.3e-12 74.7 125 46.4
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-11 73.9 108 50.0
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.2e-11 73.9 108 50.0
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 3.1e-10 69.3 116 44.8
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 5.2e-10 68.6 148 37.2
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.9e-10 68.2 138 39.9
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.0e-09 66.6 147 37.4
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 2.6e-09 66.2 108 43.5
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.6e-09 64.7 99 42.4
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 9.9e-09 64.3 83 45.8
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 1.7e-08 63.5 85 50.6
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.7e-08 63.5 85 50.6
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.7e-08 63.5 117 42.7
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.2e-08 63.2 87 42.5
Ah.12g052340 Amaranthus hybridus HOM05D005006 ORTHO05D005903 2.4e-07 59.7 131 37.4
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 7.1e-07 58.2 117 37.6
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 7.1e-07 58.2 38 71.1
AUR62019816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 7.8e-06 54.7 48 56.2


User provided reference genes

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