Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 3.1e-189 665.2 396 100.0
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 3.4e-172 608.6 396 93.7
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 5.1e-128 461.8 396 73.7
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 6.7e-128 461.5 398 74.1
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 8.5e-123 444.5 394 68.3
Solyc08g082230.3 Solanum lycopersicum HOM05D007666 ORTHO05D009567 3.2e-77 293.1 221 85.5
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 4.6e-60 236.1 232 54.3
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 1.3e-57 228.0 406 43.8
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 1.7e-54 217.6 231 54.5
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 6.4e-54 215.7 224 50.9
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 7.1e-53 212.2 408 37.7
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 7.1e-53 212.2 340 41.8
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 1.6e-52 211.1 233 51.9
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 2.1e-52 210.7 224 50.4
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 7.8e-52 208.8 224 53.1
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 1.3e-51 208.0 410 38.0
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.7e-51 207.6 226 52.2
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.3e-51 207.2 232 50.9
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 5.1e-51 206.1 226 49.1
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 8.7e-51 205.3 336 42.3
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.5e-50 204.5 226 49.1
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 1.3e-49 201.4 225 51.6
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 6.2e-49 199.1 223 52.5
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 1.1e-48 198.4 226 50.0
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 2.4e-48 197.2 409 37.2
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 3.1e-48 196.8 238 47.9
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 3.1e-48 196.8 238 50.8
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 5.3e-48 196.1 404 36.6
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 1.2e-47 194.9 235 46.0
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.6e-47 193.7 413 34.6
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 3.4e-47 193.4 413 34.6
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.8e-47 192.6 411 35.5
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.8e-47 192.6 413 34.6
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 7.6e-47 192.2 239 47.7
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 9.9e-47 191.8 413 34.4
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 1.3e-46 191.4 232 50.9
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 2.9e-46 190.3 235 47.7
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 2.9e-46 190.3 407 37.1
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 3.8e-46 189.9 408 40.4
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 3.2e-45 186.8 229 48.0
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.2e-44 184.9 226 46.9
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.2e-44 184.9 411 36.0
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 4.6e-44 183.0 244 41.8
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 6.7e-43 179.1 366 35.0
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.5e-42 177.2 206 50.0
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.5e-42 177.2 242 44.6
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 4.3e-42 176.4 224 49.6
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 2.8e-41 173.7 207 50.2
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 6.9e-40 169.1 406 34.7
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.5e-39 167.9 235 41.7
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.5e-39 167.9 229 46.3
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 2.6e-39 167.2 244 42.2
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 3.4e-39 166.8 317 34.7
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 2.2e-38 164.1 214 40.7
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 2.9e-38 163.7 324 34.3
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.8e-38 163.3 214 40.7
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 4.9e-38 162.9 242 42.1
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 4.9e-38 162.9 243 44.0
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 8.4e-38 162.2 94 97.9
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 3.2e-37 160.2 242 40.9
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 4.2e-37 159.8 224 45.5
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.6e-36 157.9 214 39.7
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 2.7e-36 157.1 244 40.2
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 3.5e-36 156.8 346 34.1
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 1.3e-35 154.8 224 42.9
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 2.3e-35 154.1 394 32.0
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 2.3e-35 154.1 242 39.7
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 6.7e-35 152.5 253 41.5
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 1.9e-34 151.0 350 34.3
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 2.5e-34 150.6 202 48.0
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 5.7e-34 149.4 239 42.7
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 1.6e-33 147.9 283 39.6
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 4.8e-33 146.4 237 42.2
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 1.4e-32 144.8 237 40.1
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 4.0e-32 143.3 219 37.4
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 9.0e-32 142.1 235 40.4
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 9.0e-32 142.1 235 40.4
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 9.0e-32 142.1 245 40.8
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 2.0e-31 141.0 235 40.4
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 2.0e-31 141.0 233 39.5
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 2.6e-31 140.6 244 40.2
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 2.9e-30 137.1 234 43.2
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 5.0e-30 136.3 220 40.5
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.3e-27 127.5 197 41.6
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 1.9e-26 124.4 97 61.9
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 2.5e-26 124.0 156 50.6
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 3.3e-26 123.6 218 40.8
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 7.4e-26 122.5 208 40.9
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 1.5e-23 114.8 159 42.8
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 1.6e-20 104.8 183 39.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 2.4e-16 90.9 216 33.8
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 3.4e-15 87.0 197 34.5
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 4.5e-15 86.7 218 32.6
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.3e-14 85.1 214 32.2
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.5e-13 80.9 245 29.4
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.5e-13 80.9 245 29.4
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.2e-13 80.5 256 27.3
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.1e-12 77.8 244 28.7
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.6e-12 77.0 227 31.7
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.3e-11 74.3 224 30.8
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.0e-11 73.9 219 30.6
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.8e-11 72.4 222 31.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.0e-10 71.2 223 25.1
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.6e-10 70.9 214 31.8
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 3.3e-10 70.5 227 26.4
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 7.4e-10 69.3 215 30.2
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.7e-09 68.2 210 30.0
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.8e-08 64.7 223 28.3
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 3.1e-08 63.9 214 28.5
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 4.1e-08 63.5 225 28.0
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 4.1e-08 63.5 205 31.2
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 7.0e-08 62.8 219 28.3
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 9.1e-08 62.4 103 36.9
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.5e-07 61.6 205 29.8
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.5e-07 61.6 185 27.6
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 2.0e-07 61.2 185 26.5
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 4.5e-07 60.1 161 27.3
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 5.9e-07 59.7 218 27.5
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.3e-06 58.5 187 26.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 2.9e-06 57.4 225 26.7


User provided reference genes

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