Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.4e-50 201.8 101 100.0
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.1e-47 193.0 101 97.0
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 2.5e-47 191.8 101 96.0
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 5.9e-28 127.5 99 68.7
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 8.5e-27 123.6 107 65.4
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.1e-26 123.2 96 68.8
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.0e-24 116.7 85 71.8
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 3.1e-21 105.1 107 59.8
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 2.0e-20 102.4 106 52.8
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 7.7e-20 100.5 115 52.2
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.0e-19 100.1 100 56.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 1.7e-19 99.4 112 51.8
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 2.9e-19 98.6 112 56.2
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 6.5e-19 97.4 108 50.9
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 8.5e-19 97.1 103 52.4
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 8.5e-19 97.1 111 52.3
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 3.2e-18 95.1 100 53.0
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 5.5e-18 94.4 110 47.3
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 5.5e-18 94.4 112 55.4
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 7.2e-18 94.0 111 53.2
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.2e-18 94.0 101 54.5
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 1.2e-17 93.2 109 49.5
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.6e-17 92.8 100 56.0
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 2.7e-17 92.0 104 52.9
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.7e-17 92.0 111 51.4
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 2.7e-17 92.0 112 50.9
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 3.6e-17 91.7 100 49.0
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 3.6e-17 91.7 104 54.8
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 4.7e-17 91.3 100 49.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 6.1e-17 90.9 106 53.8
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.9e-17 90.5 99 52.5
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.0e-16 90.1 99 52.5
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 2.3e-16 89.0 108 52.8
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 5.1e-16 87.8 97 52.6
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 5.1e-16 87.8 97 48.5
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 6.7e-16 87.4 111 50.5
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.1e-15 86.7 102 50.0
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 2.0e-15 85.9 103 46.6
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.3e-15 85.1 102 51.0
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.4e-15 84.7 97 49.5
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 5.7e-15 84.3 115 49.6
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 7.4e-15 84.0 101 44.6
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 9.7e-15 83.6 107 47.7
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 1.7e-14 82.8 112 48.2
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.2e-14 82.4 102 48.0
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.8e-14 82.0 98 49.0
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 2.8e-14 82.0 104 50.0
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 3.7e-14 81.6 104 50.0
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 4.8e-14 81.3 100 45.0
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 6.3e-14 80.9 93 53.8
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 1.4e-13 79.7 108 47.2
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 1.8e-13 79.3 101 43.6
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.4e-13 79.0 95 46.3
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 4.1e-13 78.2 104 41.3
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 5.3e-13 77.8 101 42.6
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 5.3e-13 77.8 98 44.9
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 5.3e-13 77.8 98 44.9
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 5.3e-13 77.8 108 49.1
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 7.0e-13 77.4 100 45.0
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 9.1e-13 77.0 116 44.0
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.2e-12 76.6 100 50.0
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 1.6e-12 76.3 120 44.2
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.6e-12 76.3 109 44.0
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.6e-12 76.3 103 44.7
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 1.6e-12 76.3 110 48.2
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.6e-12 76.3 93 41.9
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.6e-12 76.3 93 41.9
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 4.5e-12 74.7 67 61.2
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 7.7e-12 73.9 116 43.1
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 1.7e-11 72.8 106 43.4
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 2.9e-11 72.0 101 44.6
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 2.9e-11 72.0 103 44.7
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 3.8e-11 71.6 111 46.8
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.1e-10 70.1 109 43.1
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.5e-10 69.7 101 47.5
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-10 69.3 101 46.5
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-10 69.3 101 46.5
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 3.2e-10 68.6 110 40.9
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 7.2e-10 67.4 108 42.6
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.2e-09 66.6 103 48.5
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 4.7e-09 64.7 104 43.3
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 1.4e-08 63.2 101 39.6
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 3.0e-08 62.0 110 40.9
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 3.0e-08 62.0 115 39.1
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 4.0e-08 61.6 136 37.5
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 5.2e-08 61.2 113 42.5
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 1.5e-07 59.7 114 37.7
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 1.5e-07 59.7 110 39.1
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 2.6e-07 58.9 109 38.5
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 2.6e-07 58.9 112 39.3
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 2.6e-07 58.9 112 39.3
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 2.6e-07 58.9 57 52.6
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 3.3e-07 58.5 110 39.1
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 3.3e-07 58.5 96 45.8
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 4.4e-07 58.2 116 37.1
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 5.7e-07 57.8 75 50.7
Sc07g0010040 Simmondsia chinensis HOM05D007590 ORTHO05D007875 5.7e-07 57.8 118 43.2
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 1.3e-06 56.6 113 38.1
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 6.3e-06 54.3 121 35.5
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 6.3e-06 54.3 117 35.9
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 6.3e-06 54.3 114 37.7
Haze_09063 Corylus avellana HOM05D007590 ORTHO05D007875 6.3e-06 54.3 73 47.9


User provided reference genes

Program Settings