Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.3e-40 167.5 85 100.0
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.3e-32 141.4 84 90.5
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 9.6e-32 139.8 84 89.3
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.0e-25 119.8 80 77.5
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 6.2e-23 110.5 80 73.8
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 6.2e-23 110.5 80 73.8
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 8.2e-23 110.2 79 74.7
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 2.6e-21 105.1 76 75.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 5.8e-21 104.0 82 70.7
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.9e-18 93.6 82 63.4
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.9e-18 93.6 82 63.4
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 8.7e-17 90.1 82 63.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.7e-17 90.1 76 60.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.3e-16 87.8 81 64.2
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 4.3e-16 87.8 82 64.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 9.7e-16 86.7 83 57.8
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-15 86.3 81 61.7
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.2e-15 85.5 84 58.3
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.2e-15 85.5 81 61.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.8e-15 84.3 81 61.7
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 4.8e-15 84.3 82 56.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 4.8e-15 84.3 78 60.3
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 6.3e-15 84.0 86 57.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 8.2e-15 83.6 80 58.8
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.4e-14 82.8 81 59.3
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-14 82.8 82 61.0
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.1e-14 81.6 85 56.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.1e-14 81.3 81 58.0
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.9e-14 80.5 80 58.8
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.9e-14 80.5 82 59.8
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.0e-14 80.1 80 58.8
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.2e-13 79.7 82 57.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.5e-13 79.3 82 58.5
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.0e-13 79.0 80 57.5
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.6e-13 78.6 87 51.7
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.6e-13 78.6 82 58.5
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.6e-13 78.6 80 61.2
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.4e-13 78.2 85 52.9
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 3.4e-13 78.2 80 56.2
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-13 78.2 80 56.2
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 4.5e-13 77.8 80 60.0
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.5e-13 77.8 80 56.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.9e-13 77.4 80 60.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.9e-13 77.4 80 60.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 7.7e-13 77.0 81 59.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 7.7e-13 77.0 82 57.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.7e-13 77.0 80 55.0
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-12 76.6 79 55.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.0e-12 76.6 80 53.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-12 76.3 80 57.5
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.3e-12 76.3 80 58.8
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.7e-12 75.9 86 52.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.2e-12 75.5 80 56.2
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.9e-12 75.1 80 53.8
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.9e-12 75.1 79 54.4
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 3.8e-12 74.7 86 53.5
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.8e-12 74.7 81 56.8
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.0e-12 74.3 80 58.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.0e-12 74.3 77 58.4
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 5.0e-12 74.3 80 52.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 5.0e-12 74.3 83 45.8
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 6.5e-12 73.9 87 54.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 8.5e-12 73.6 79 54.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.1e-11 73.2 83 50.6
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-11 73.2 80 55.0
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.1e-11 73.2 85 57.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.4e-11 72.8 83 53.0
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.9e-11 72.4 79 50.6
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.9e-11 72.4 82 52.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.5e-11 72.0 87 49.4
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 2.5e-11 72.0 82 48.8
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.5e-11 72.0 80 50.0
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.5e-11 72.0 80 55.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.5e-11 72.0 80 56.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 4.2e-11 71.2 82 53.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 5.5e-11 70.9 80 51.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.2e-11 70.5 83 49.4
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.2e-11 70.5 81 55.6
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 9.4e-11 70.1 83 49.4
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 9.4e-11 70.1 83 51.8
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 9.4e-11 70.1 77 54.5
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 9.4e-11 70.1 79 57.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.2e-10 69.7 77 57.1
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.6e-10 69.3 83 50.6
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.1e-10 68.9 88 50.0
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.7e-10 68.6 78 51.3
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.7e-10 68.6 87 49.4
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-10 68.2 90 46.7
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 3.6e-10 68.2 83 50.6
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 3.6e-10 68.2 86 47.7
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.6e-10 67.8 80 52.5
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.6e-10 67.8 80 52.5
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 4.6e-10 67.8 76 55.3
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.6e-10 67.8 80 55.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.6e-10 67.8 81 53.1
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.1e-10 67.4 84 52.4
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 6.1e-10 67.4 78 51.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.1e-10 67.4 83 49.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 6.1e-10 67.4 78 48.7
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.1e-10 67.4 83 53.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 7.9e-10 67.0 79 51.9
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.9e-10 67.0 83 49.4
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 7.9e-10 67.0 89 49.4
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.8e-09 65.9 89 46.1
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.3e-09 65.5 90 46.7
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.0e-09 65.1 78 48.7
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.0e-09 65.1 86 52.3
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.0e-09 65.1 86 52.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.0e-09 65.1 77 53.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.0e-09 65.1 77 53.2
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 3.9e-09 64.7 80 48.8
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.9e-09 64.7 83 51.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.1e-09 64.3 80 51.2
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 5.1e-09 64.3 78 48.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 5.1e-09 64.3 80 52.5
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 5.1e-09 64.3 81 46.9
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 5.1e-09 64.3 84 50.0
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 6.7e-09 63.9 76 51.3
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 6.7e-09 63.9 82 51.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 8.8e-09 63.5 78 48.7
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 8.8e-09 63.5 80 47.5
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 8.8e-09 63.5 78 48.7
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 82 48.8
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.1e-08 63.2 78 46.2
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.1e-08 63.2 85 47.1
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-08 63.2 87 41.4
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-08 63.2 85 49.4
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.1e-08 63.2 83 48.2
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.1e-08 63.2 89 46.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-08 62.8 76 50.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-08 62.8 83 48.2
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.9e-08 62.4 80 46.2
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.9e-08 62.4 81 53.1
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.9e-08 62.4 82 45.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.9e-08 62.4 79 46.8
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 2.5e-08 62.0 78 47.4
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.5e-08 62.0 81 46.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.5e-08 62.0 83 50.6
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.3e-08 61.2 76 48.7
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 4.3e-08 61.2 84 46.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 5.7e-08 60.8 79 51.9
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.7e-08 60.8 79 49.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.4e-08 60.5 80 47.5
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 9.7e-08 60.1 76 47.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 9.7e-08 60.1 76 48.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 9.7e-08 60.1 89 46.1
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.3e-07 59.7 79 46.8
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-07 59.3 77 49.4
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-07 58.9 78 48.7
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 2.8e-07 58.5 77 48.1
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.8e-07 58.5 76 46.1
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.8e-07 57.8 82 47.6
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.8e-07 57.8 84 46.4
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 4.8e-07 57.8 82 47.6
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 6.3e-07 57.4 76 47.4
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 6.3e-07 57.4 82 47.6
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 6.3e-07 57.4 76 47.4
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 8.2e-07 57.0 84 41.7
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 8.2e-07 57.0 50 64.0
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.1e-06 54.7 83 42.2
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 5.3e-06 54.3 77 45.5
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 5.3e-06 54.3 77 45.5


User provided reference genes

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