Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 0.0e+00 1834.7 1394 100.0
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 0.0e+00 1612.0 1371 88.5
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 0.0e+00 1362.8 1457 72.5
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 0.0e+00 1090.9 1244 70.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-281 974.2 1444 60.7
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.0e-275 953.4 1414 62.0
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.0e-214 750.7 1233 53.4
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.2e-209 733.4 1498 48.1
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.5e-209 732.6 1246 56.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.7e-202 711.1 1267 49.1
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.1e-201 708.4 1182 58.3
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.3e-186 658.3 1188 52.0
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.6e-184 650.2 1014 56.8
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.3e-165 588.6 1313 51.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 4.7e-160 570.1 1196 47.6
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.3e-159 567.8 1174 38.8
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 7.5e-158 562.8 1288 52.2
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 7.5e-158 562.8 1288 52.2
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.1e-156 558.9 619 53.0
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.9e-154 550.4 1241 49.9
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.1e-148 532.3 1171 50.9
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 3.5e-147 527.3 1183 48.9
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.6e-147 526.9 639 50.4
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.5e-145 521.9 574 53.3
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.5e-145 521.9 1154 51.1
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.3e-145 520.8 1168 40.5
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 9.3e-140 502.7 553 53.0
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.7e-138 498.4 1251 37.9
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.3e-138 498.0 1154 47.2
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 8.1e-136 489.6 1263 36.0
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.6e-131 475.3 1167 46.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.1e-131 474.9 1137 38.5
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.0e-131 473.4 1161 38.0
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.8e-128 463.8 1265 49.3
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.2e-124 451.1 666 44.4
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-123 449.1 574 46.7
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 6.0e-123 446.8 1177 49.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.9e-121 441.8 477 52.0
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.4e-113 413.3 1155 35.7
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 9.6e-113 412.9 984 52.4
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.8e-109 401.0 1175 33.9
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.5e-105 388.3 1234 39.7
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 7.4e-105 386.7 686 40.1
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 9.0e-103 379.8 1152 32.2
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.9e-100 372.1 741 38.7
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.2e-100 371.3 694 39.0
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 9.4e-100 369.8 688 38.7
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-99 369.0 606 41.7
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 3.6e-99 367.9 1157 31.5
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.8e-98 365.5 701 37.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-98 365.5 452 47.6
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 6.7e-98 363.6 605 41.5
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 4.1e-95 354.4 1147 36.9
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 2.0e-94 352.1 670 39.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.4e-94 351.3 622 39.5
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 4.5e-94 350.9 610 40.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 8.5e-93 346.7 1157 43.2
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.9e-92 345.5 691 38.2
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 5.5e-92 344.0 1143 39.9
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.3e-90 338.6 598 39.8
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.0e-90 338.2 691 36.9
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 6.7e-90 337.0 696 37.1
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 2.0e-89 335.5 672 36.8
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 4.4e-89 334.3 675 36.1
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.4e-89 333.6 691 36.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 9.7e-89 333.2 606 39.9
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.3e-88 332.8 732 36.9
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.3e-88 332.8 699 36.5
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.8e-88 331.6 681 36.1
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.7e-88 331.3 677 36.8
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.8e-88 330.9 690 36.7
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 6.3e-88 330.5 1128 41.7
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.4e-87 329.3 603 38.3
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 4.1e-87 327.8 598 38.6
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 5.3e-87 327.4 703 36.8
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-86 326.2 698 36.4
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.6e-86 325.1 676 35.4
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 4.5e-86 324.3 658 36.8
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 4.5e-86 324.3 645 38.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-85 322.8 647 38.3
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 3.8e-85 321.2 721 36.6
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.2e-83 316.2 599 40.4
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.7e-83 315.1 623 35.3
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 4.7e-83 314.3 642 36.9
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.0e-83 313.5 693 35.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.8e-82 312.4 719 35.6
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.2e-81 309.7 1166 33.0
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.5e-81 309.3 600 37.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.4e-81 307.8 691 34.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.4e-81 307.8 1136 33.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 7.5e-81 307.0 1165 41.3
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 9.7e-81 306.6 683 34.1
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.4e-79 302.8 697 35.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-77 296.2 686 35.1
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-77 295.8 660 36.1
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.7e-77 295.8 666 34.5
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.7e-77 295.8 602 37.7
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 3.8e-77 294.7 648 34.9
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-76 292.7 660 35.9
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.5e-76 292.0 650 36.0
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 5.5e-76 290.8 645 34.9
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.2e-75 289.7 635 35.3
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.6e-75 289.3 648 35.8
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.6e-75 289.3 603 36.7
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 2.7e-75 288.5 595 36.3
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 8.8e-74 283.5 683 32.7
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 7.0e-71 273.9 616 35.2
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 7.0e-71 273.9 595 35.6
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 7.0e-71 273.9 1175 35.7
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.7e-70 271.9 596 35.4
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.9e-69 268.5 596 35.4
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.5e-68 265.4 676 32.8
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.2e-67 263.1 1183 35.7
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.6e-67 261.5 606 34.0
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 8.0e-67 260.4 676 32.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 6.8e-66 257.3 495 35.8
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 9.8e-65 253.4 615 33.8
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.7e-64 252.7 605 33.7
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 3.7e-64 251.5 599 34.4
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.3e-64 250.8 592 35.5
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 8.3e-64 250.4 540 35.9
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.8e-63 249.2 598 35.1
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.1e-63 248.4 697 31.1
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.5e-62 245.0 573 35.4
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 5.9e-62 244.2 658 34.7
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.7e-62 243.8 687 30.7
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.7e-61 242.7 579 34.0
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.3e-61 242.3 987 41.5
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.8e-59 235.3 1216 33.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 8.0e-59 233.8 554 33.9
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.4e-58 233.0 639 32.9
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.6e-57 228.8 1125 35.5
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 2.6e-57 228.8 582 32.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 4.4e-57 228.0 584 33.2
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.4e-57 228.0 550 33.5
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 9.8e-57 226.9 522 33.1
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.1e-55 223.4 555 32.4
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.1e-55 223.4 555 32.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.1e-55 223.4 555 32.4
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.4e-55 223.0 555 32.6
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.4e-55 222.2 678 32.7
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 4.1e-55 221.5 497 33.8
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.6e-54 219.5 754 30.6
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.5e-54 218.4 582 34.2
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 8.6e-53 213.8 587 32.9
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.2e-50 204.5 604 30.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.7e-45 189.5 729 30.5
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.3e-44 184.9 705 29.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 8.9e-42 177.2 444 32.4
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.0e-41 176.0 708 29.1
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 5.8e-41 174.5 676 30.8
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.6e-36 157.9 591 28.8
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 5.6e-36 157.9 622 28.8
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.1e-34 152.1 664 28.6
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.9e-26 124.4 694 26.7
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 5.1e-21 108.2 599 26.7
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.6e-20 104.8 300 35.3
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.2e-17 97.1 361 32.7
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 6.4e-16 91.3 671 25.2
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.0e-13 82.4 147 37.4
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.0e-13 82.4 147 37.4
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-11 76.6 266 34.6
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 4.8e-11 75.1 296 29.7
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.3e-10 71.6 407 28.0
unitig_88.g27643 Utricularia gibba HOM05D003962 ORTHO05D004714 1.1e-07 63.9 136 49.3


User provided reference genes

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