Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 0.0e+00 1094.0 537 100.0
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 0.0e+00 1085.5 537 99.1
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 0.0e+00 1083.2 537 98.9
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 3.9e-304 1047.3 538 95.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 2.4e-293 1011.5 534 92.3
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.9e-291 1003.8 558 88.7
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.2e-290 1000.7 558 88.2
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 6.5e-275 950.3 538 85.3
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.0e-272 943.0 535 85.0
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 5.7e-271 937.2 537 82.9
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 7.4e-271 936.8 532 84.4
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 4.8e-270 934.1 534 83.7
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 6.3e-270 933.7 535 84.3
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 6.3e-270 933.7 532 83.1
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 6.3e-270 933.7 537 82.5
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 6.3e-270 933.7 537 82.9
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-269 932.9 534 84.1
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-269 932.9 534 84.1
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 6.9e-269 930.2 538 84.0
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.0e-268 928.7 534 83.0
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.0e-268 928.7 534 83.0
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 3.4e-268 927.9 537 82.3
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 4.5e-268 927.5 532 83.6
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 4.5e-268 927.5 530 83.2
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.0e-267 926.4 538 83.8
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.0e-267 926.4 535 82.4
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.3e-267 926.0 532 83.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.3e-267 926.0 529 82.6
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 2.2e-267 925.2 537 82.7
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 6.5e-267 923.7 537 81.8
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 6.5e-267 923.7 537 82.1
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 8.5e-267 923.3 534 83.0
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 1.1e-266 922.9 529 82.2
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.1e-266 922.9 538 82.5
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 3.2e-266 921.4 537 81.6
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 5.5e-266 920.6 533 82.6
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 9.4e-266 919.8 529 81.9
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 9.4e-266 919.8 529 83.2
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.6e-265 919.1 530 81.7
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.6e-265 919.1 529 83.4
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.1e-265 918.7 539 82.2
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 2.1e-265 918.7 537 82.3
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.1e-265 918.7 537 81.9
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.7e-265 918.3 539 81.4
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 6.1e-265 917.1 534 81.6
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 7.9e-265 916.8 537 80.8
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.8e-264 915.6 537 81.2
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.8e-264 915.6 529 81.5
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.3e-264 915.2 537 80.8
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 3.0e-264 914.8 537 80.8
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 3.9e-264 914.4 529 82.4
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.1e-264 914.1 537 81.2
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.7e-264 913.7 537 81.0
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.0e-263 912.1 539 81.4
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 2.0e-263 912.1 537 81.8
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 4.3e-263 911.0 537 81.0
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.7e-263 910.6 530 82.3
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 7.4e-263 910.2 537 80.8
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.7e-263 909.8 537 80.8
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.7e-263 909.8 544 80.3
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.3e-262 909.4 537 80.8
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.7e-262 907.9 537 80.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 8.2e-262 906.7 535 82.8
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.8e-261 905.6 535 81.3
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.8e-261 905.6 529 81.9
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.8e-261 905.6 537 80.6
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 3.1e-261 904.8 529 80.7
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.1e-261 904.8 537 80.1
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.6e-260 901.7 529 81.5
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 3.4e-260 901.4 529 81.3
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 7.7e-260 900.2 536 81.0
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.7e-260 900.2 532 80.3
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.0e-259 899.8 537 79.9
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.0e-259 899.8 529 81.7
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.7e-259 899.0 529 81.5
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.2e-259 898.7 527 80.5
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 6.5e-259 897.1 529 81.7
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 8.5e-259 896.7 529 81.7
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 8.5e-259 896.7 533 79.2
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.1e-258 896.3 529 80.7
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 9.4e-258 893.3 534 80.3
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.6e-257 891.3 534 80.1
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 3.6e-257 891.3 534 79.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 4.7e-257 891.0 537 79.5
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 6.1e-257 890.6 534 79.4
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.0e-256 889.8 534 80.0
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 3.0e-256 888.3 530 80.0
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 3.9e-256 887.9 534 79.8
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 5.1e-256 887.5 535 80.7
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.1e-256 887.5 533 81.1
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 6.7e-256 887.1 529 79.6
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 8.8e-256 886.7 529 80.3
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 8.8e-256 886.7 533 80.7
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.1e-255 886.3 530 79.8
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.2e-254 882.1 529 79.8
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 6.3e-254 880.6 535 78.3
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 5.3e-253 877.5 529 79.6
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 7.0e-253 877.1 538 79.9
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.2e-252 876.3 537 78.4
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.0e-252 875.5 536 75.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 3.5e-252 874.8 534 78.3
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 4.5e-252 874.4 534 78.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 3.2e-250 868.2 535 77.8
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 4.2e-250 867.8 529 77.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.1e-249 865.5 536 75.7
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 3.6e-249 864.8 529 78.3
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.2e-248 860.9 684 65.5
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 9.1e-245 850.1 541 77.1
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 2.9e-243 845.1 537 77.5
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 6.1e-241 837.4 493 81.9
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 6.3e-238 827.4 668 65.1
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 4.5e-236 821.2 488 80.9
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-234 816.6 495 79.2
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.0e-231 805.8 556 70.3
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 5.4e-229 797.7 527 71.3
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.3e-227 792.3 538 69.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.1e-226 790.0 537 68.9
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 6.6e-219 764.2 526 68.6
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 5.2e-216 754.6 535 72.7
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.4e-213 745.7 534 65.5
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 2.5e-210 735.7 525 65.5
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.9e-205 719.5 532 64.3
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 2.3e-203 712.6 442 79.4
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.7e-198 695.3 404 79.5
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.4e-197 693.3 525 64.4
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 1.1e-194 683.7 497 66.4
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 2.6e-183 646.0 364 82.7
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.1e-176 624.0 494 64.6
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.9e-170 603.2 422 70.6
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 7.9e-164 581.3 712 49.6
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 5.7e-138 495.4 301 77.7
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.6e-132 476.1 537 49.7
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 7.7e-127 458.4 313 72.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 7.0e-120 435.3 536 46.6
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 4.9e-105 386.0 411 51.3
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 2.6e-98 363.6 262 67.6
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.7e-79 300.4 186 75.3
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 4.5e-66 256.5 148 81.8
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.3e-62 244.2 148 75.7
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 2.6e-42 177.6 140 63.6
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 8.5e-41 172.6 219 45.2
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.2e-36 156.0 94 76.6
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 5.3e-35 153.3 88 84.1
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.2e-34 152.1 104 70.2
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 7.9e-31 139.4 97 70.1
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 8.2e-20 102.8 93 61.3
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 6.5e-17 93.2 96 50.0
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 4.0e-14 84.0 46 82.6
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.3e-13 80.9 53 69.8
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 2.9e-09 67.8 45 64.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 6.5e-09 66.6 44 65.9
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 6.5e-09 66.6 44 65.9
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 5.5e-08 63.5 41 68.3
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 9.4e-08 62.8 50 72.0
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 4.7e-07 60.5 201 26.9
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 40 72.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 40 72.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-07 60.5 40 72.5
ClCG10G009660 Citrullus lanatus HOM05D001661 ORTHO05D001575 8.0e-07 59.7 163 28.2
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 8.0e-07 59.7 85 51.8
MELO3C018051.2 Cucumis melo HOM05D001661 ORTHO05D001575 2.3e-06 58.2 134 29.1
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 3.0e-06 57.8 136 30.9
Eucgr.I02608 Eucalyptus grandis HOM05D001661 ORTHO05D001575 4.0e-06 57.4 133 28.6
CsaV3_4G014730 Cucumis sativus L. HOM05D001661 ORTHO05D001575 5.2e-06 57.0 134 29.1
SEGI_03802 Sequoiadendron giganteum HOM05D001661 ORTHO05D001575 8.8e-06 56.2 160 30.0


User provided reference genes

Program Settings