Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012178 Solanum tuberosum HOM05D007283 ORTHO05D011204 0.0e+00 1248.4 652 100.0
Sopen08g029960 Solanum pennellii HOM05D007283 ORTHO05D011204 5.4e-308 1060.4 651 86.8
PGSC0003DMG400012179 Solanum tuberosum HOM05D007283 ORTHO05D011204 1.2e-195 687.2 656 61.9
CAN.G532.78 Capsicum annuum HOM05D007283 ORTHO05D011204 3.7e-176 622.5 728 54.8
CAN.G532.52 Capsicum annuum HOM05D007283 ORTHO05D011204 1.9e-167 593.6 688 55.5
CAN.G532.48 Capsicum annuum HOM05D007283 ORTHO05D011204 1.1e-154 551.2 719 52.2
Solyc08g081650.3 Solanum lycopersicum HOM05D007283 ORTHO05D011204 1.3e-152 544.3 695 52.2
Solyc08g081670.3 Solanum lycopersicum HOM05D007283 ORTHO05D011204 2.9e-152 543.1 352 84.1
PGSC0003DMG400012181 Solanum tuberosum HOM05D007283 ORTHO05D011204 5.5e-151 538.9 666 53.9
CAN.G532.49 Capsicum annuum HOM05D007283 ORTHO05D011204 7.4e-148 528.5 655 51.5
Sopen08g029950 Solanum pennellii HOM05D007283 ORTHO05D011204 5.5e-143 512.3 782 48.1
Nitab4.5_0000363g0170 Nicotiana tabacum HOM05D007283 ORTHO05D011204 1.9e-140 503.8 496 60.5
CAN.G532.50 Capsicum annuum HOM05D007283 ORTHO05D011204 2.5e-135 486.9 672 49.1
Peaxi162Scf00074g01728 Petunia axillaris HOM05D007283 ORTHO05D011204 2.3e-117 427.2 870 40.3
Nitab4.5_0000584g0030 Nicotiana tabacum HOM05D007283 ORTHO05D011204 5.1e-117 426.0 772 41.8
CAN.G532.51 Capsicum annuum HOM05D007283 ORTHO05D011204 1.6e-102 377.9 607 45.1
Nitab4.5_0003324g0010 Nicotiana tabacum HOM05D007283 ORTHO05D011204 1.3e-96 358.2 329 64.7
Peaxi162Scf00311g00051 Petunia axillaris HOM05D007283 ORTHO05D011204 1.3e-96 358.2 760 39.1
Peaxi162Scf00071g01020 Petunia axillaris HOM05D007283 ORTHO05D011204 2.9e-96 357.1 724 40.7
Peaxi162Scf00071g00102 Petunia axillaris HOM05D007283 ORTHO05D011204 1.8e-85 321.2 510 43.3
Nitab4.5_0004762g0030 Nicotiana tabacum HOM05D007283 ORTHO05D011204 6.4e-83 312.8 457 47.3
Nitab4.5_0003324g0020 Nicotiana tabacum HOM05D007283 ORTHO05D011204 1.7e-80 304.7 346 54.6
Nitab4.5_0008537g0020 Nicotiana tabacum HOM05D007283 ORTHO05D011204 1.2e-78 298.5 451 45.7
Peaxi162Scf00071g01046 Petunia axillaris HOM05D007283 ORTHO05D011204 1.6e-78 298.1 471 45.4
Nitab4.5_0002297g0120 Nicotiana tabacum HOM05D007283 ORTHO05D011204 6.8e-77 292.7 811 35.9
Peaxi162Scf00071g00106 Petunia axillaris HOM05D007283 ORTHO05D011204 1.9e-71 274.6 464 43.5
Peaxi162Scf00071g01047 Petunia axillaris HOM05D007283 ORTHO05D011204 5.6e-63 246.5 620 34.7
Peaxi162Scf00071g01045 Petunia axillaris HOM05D007283 ORTHO05D011204 6.8e-61 239.6 449 41.2
Nitab4.5_0000584g0020 Nicotiana tabacum HOM05D007283 ORTHO05D011204 1.7e-51 208.4 466 38.4
Sopen04g004580 Solanum pennellii HOM05D007283 ORTHO05D033971 7.1e-50 203.0 630 31.9
Peaxi162Scf00071g01029 Petunia axillaris HOM05D007283 ORTHO05D011204 7.8e-49 199.5 449 35.6
Peaxi162Scf00071g01049 Petunia axillaris HOM05D007283 ORTHO05D011204 1.3e-48 198.7 450 36.2
Solyc04g009450.1 Solanum lycopersicum HOM05D007283 ORTHO05D033971 1.7e-48 198.4 630 31.9
Peaxi162Scf00057g00526 Petunia axillaris HOM05D007283 ORTHO05D011204 2.5e-39 167.9 360 38.6
CAN.G1861.8 Capsicum annuum HOM05D007283 ORTHO05D033971 4.3e-39 167.2 695 29.8
PGSC0003DMG400012180 Solanum tuberosum HOM05D007283 ORTHO05D010540 1.6e-33 148.7 220 43.6
Peaxi162Scf00382g00052 Petunia axillaris HOM05D007283 ORTHO05D010540 1.8e-24 118.6 204 39.7
Nitab4.5_0000874g0050 Nicotiana tabacum HOM05D007283 ORTHO05D010540 5.1e-24 117.1 214 39.3
CAN.G170.105 Capsicum annuum HOM05D007283 ORTHO05D011204 1.1e-23 115.9 251 36.7
CAN.G1060.1 Capsicum annuum HOM05D007283 ORTHO05D011204 5.7e-23 113.6 180 44.4
Nitab4.5_0000874g0090 Nicotiana tabacum HOM05D007283 ORTHO05D010540 9.7e-23 112.8 217 40.6
Nitab4.5_0006473g0030 Nicotiana tabacum HOM05D007283 ORTHO05D010540 9.7e-23 112.8 196 37.8
Peaxi162Scf00382g00056 Petunia axillaris HOM05D007283 ORTHO05D010540 9.7e-23 112.8 205 38.0
Nitab4.5_0002297g0110 Nicotiana tabacum HOM05D007283 ORTHO05D011204 1.1e-21 109.4 312 34.6
Peaxi162Scf00071g01052 Petunia axillaris HOM05D007283 ORTHO05D011204 1.3e-19 102.4 314 30.6
Peaxi162Scf04031g00008 Petunia axillaris HOM05D008221 ORTHO05D011890 1.1e-18 99.4 113 59.3
Peaxi162Scf00382g00051 Petunia axillaris HOM05D007283 ORTHO05D010540 1.9e-18 98.6 191 36.6
Nitab4.5_0006473g0010 Nicotiana tabacum HOM05D007283 ORTHO05D010540 5.5e-18 97.1 214 37.9
PGSC0003DMG400036385 Solanum tuberosum HOM05D007283 ORTHO05D010540 1.8e-16 92.0 209 32.5
CAN.G656.4 Capsicum annuum HOM05D007283 ORTHO05D010540 5.7e-15 87.0 283 27.2
Sopen05g004990 Solanum pennellii HOM05D007283 ORTHO05D010540 1.3e-14 85.9 229 31.0
PGSC0003DMG400014569 Solanum tuberosum HOM05D007283 ORTHO05D010540 1.6e-14 85.5 173 35.3
Lsat_1_v5_gn_8_40020 Lactuca sativa HOM05D007283 ORTHO05D002300 2.8e-14 84.7 190 31.6
FAN01G3072 Fragaria x ananassa HOM05D007283 ORTHO05D013080 1.4e-13 82.4 265 29.4
Oeu039277.1 Olea europaea HOM05D007283 ORTHO05D010540 3.1e-13 81.3 200 31.0
CAN.G656.5 Capsicum annuum HOM05D007283 ORTHO05D010540 4.1e-13 80.9 209 31.6
CAN.G1902.1 Capsicum annuum HOM05D007283 ORTHO05D010540 9.1e-13 79.7 171 32.7
Oeu039272.1 Olea europaea HOM05D007283 ORTHO05D010540 1.2e-12 79.3 201 31.3
CAN.G1902.5 Capsicum annuum HOM05D007283 ORTHO05D010540 2.6e-12 78.2 171 34.5
CAN.G1902.2 Capsicum annuum HOM05D007283 ORTHO05D010540 3.4e-12 77.8 171 36.3
CAN.G1902.3 Capsicum annuum HOM05D007283 ORTHO05D010540 4.5e-12 77.4 171 33.9
CAN.G656.1 Capsicum annuum HOM05D007283 ORTHO05D010540 4.5e-12 77.4 171 32.2
CAN.G656.2 Capsicum annuum HOM05D007283 ORTHO05D010540 4.5e-12 77.4 171 33.3
CAN.G656.7 Capsicum annuum HOM05D007283 ORTHO05D010540 5.9e-12 77.0 173 32.9
FAN06G2603 Fragaria x ananassa HOM05D007283 ORTHO05D013080 5.9e-12 77.0 229 31.4
FvH4_7g16860 Fragaria vesca HOM05D007283 ORTHO05D013080 7.7e-12 76.6 229 31.4
FAN06G1020 Fragaria x ananassa HOM05D007283 ORTHO05D013080 2.2e-11 75.1 229 31.0
CAN.G610.91 Capsicum annuum HOM05D007283 ORTHO05D010540 2.9e-11 74.7 171 31.6
CAN.G656.3 Capsicum annuum HOM05D007283 ORTHO05D010540 2.9e-11 74.7 171 31.0
CAN.G656.8 Capsicum annuum HOM05D007283 ORTHO05D010540 2.9e-11 74.7 63 52.4
FAN03G0612 Fragaria x ananassa HOM05D007283 ORTHO05D013080 3.8e-11 74.3 237 31.2
CAN.G2066.1 Capsicum annuum HOM05D007283 ORTHO05D010540 5.0e-11 73.9 63 52.4
FAN10G4341 Fragaria x ananassa HOM05D007283 ORTHO05D013080 6.5e-11 73.6 331 26.6
Hma1.2p1_0061F.1_g033990 Hydrangea macrophylla HOM05D000497 ORTHO05D002300 1.4e-10 72.4 285 29.5
CAN.G656.6 Capsicum annuum HOM05D007283 ORTHO05D010540 1.9e-10 72.0 171 32.7
FAN10G0450 Fragaria x ananassa HOM05D007283 ORTHO05D013080 1.9e-10 72.0 331 26.3
Cc05_g13430 Coffea canephora HOM05D007283 ORTHO05D010540 4.2e-10 70.9 204 35.3
AUR62035237 Chenopodium quinoa HOM05D007283 ORTHO05D023380 5.5e-10 70.5 231 29.0
CAN.G656.12 Capsicum annuum HOM05D007283 ORTHO05D022165 7.2e-10 70.1 278 27.0
HanXRQChr15g0476341 Helianthus annuus HOM05D000497 ORTHO05D002300 7.2e-10 70.1 191 30.9
Sopen05g004980 Solanum pennellii HOM05D007283 ORTHO05D022165 2.1e-09 68.6 295 26.1
CAN.G656.9 Capsicum annuum HOM05D007283 ORTHO05D010540 7.9e-09 66.6 73 43.8
Migut.E00337 Erythranthe guttata HOM05D007283 ORTHO05D010540 1.4e-08 65.9 58 55.2
CAN.G7917.1 Capsicum annuum HOM05D007283 ORTHO05D022165 6.7e-08 63.5 102 41.2
MSTRG.833 Avicennia marina HOM05D000497 ORTHO05D002300 1.1e-07 62.8 136 32.4
TAR374G0492 Trochodendron aralioides HOM05D000497 ORTHO05D002300 1.5e-07 62.4 67 49.3
Peaxi162Scf00382g00511 Petunia axillaris HOM05D007283 ORTHO05D010540 2.0e-07 62.0 55 52.7
CSS0037642 Camellia sinensis var. sinensis HOM05D000497 ORTHO05D002300 2.6e-07 61.6 53 58.5
CAN.G379.19 Capsicum annuum HOM05D000497 ORTHO05D015562 2.6e-07 61.6 185 31.4
SGA_v2.0_scaffold170G38757 Striga asiatica HOM05D000497 ORTHO05D002300 2.6e-07 61.6 64 48.4
Ah.03g137720 Amaranthus hybridus HOM05D000497 ORTHO05D023380 3.3e-07 61.2 177 29.4
vmacro10554 Vaccinium macrocarpon HOM05D000497 ORTHO05D010540 3.3e-07 61.2 196 27.6
CSS0005103 Camellia sinensis var. sinensis HOM05D000497 ORTHO05D002300 4.4e-07 60.8 95 43.2
Hma1.2p1_0592F.1_g185350 Hydrangea macrophylla HOM05D000497 ORTHO05D002300 4.4e-07 60.8 76 42.1
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 5.7e-07 60.5 76 42.1
Sc04g0003530 Simmondsia chinensis HOM05D000497 ORTHO05D002300 5.7e-07 60.5 143 26.6
PGSC0003DMG400014570 Solanum tuberosum HOM05D007283 ORTHO05D022165 5.7e-07 60.5 294 24.8
unitig_27.g25250 Utricularia gibba HOM05D000497 ORTHO05D002300 5.7e-07 60.5 46 60.9
HanXRQChr08g0213831 Helianthus annuus HOM05D000497 ORTHO05D002300 7.4e-07 60.1 74 39.2
TAR622G1395 Trochodendron aralioides HOM05D000497 ORTHO05D002300 7.4e-07 60.1 59 50.8
MSTRG.2237 Avicennia marina HOM05D007283 ORTHO05D010540 9.7e-07 59.7 74 43.2
Hma1.2p1_0592F.1_g185360 Hydrangea macrophylla HOM05D000245 ORTHO05D002300 9.7e-07 59.7 46 60.9
Hma1.2p1_2942F.1_g330625 Hydrangea macrophylla HOM05D000245 ORTHO05D002300 9.7e-07 59.7 46 60.9
Peaxi162Scf00450g00513 Petunia axillaris HOM05D000245 ORTHO05D000020 9.7e-07 59.7 179 28.5
Solyc05g009250.1 Solanum lycopersicum HOM05D007283 ORTHO05D022165 9.7e-07 59.7 57 49.1
MSTRG.13529 Avicennia marina HOM05D007283 ORTHO05D010540 1.3e-06 59.3 78 46.2
Dinv21092 Davidia involucrata HOM05D000497 ORTHO05D002300 1.3e-06 59.3 116 35.3
HanXRQChr17g0552041 Helianthus annuus HOM05D000497 ORTHO05D002300 1.3e-06 59.3 202 29.2
unitig_22.g5570 Utricularia gibba HOM05D000497 ORTHO05D002300 1.3e-06 59.3 65 47.7
EL10Ac6g14420 Beta vulgaris HOM05D007283 ORTHO05D023380 1.7e-06 58.9 451 25.7
SGA_v2.0_scaffold14G06857 Striga asiatica HOM05D000497 ORTHO05D002300 1.7e-06 58.9 54 50.0
Thhalv10009619m.g Eutrema salsugineum HOM05D000497 ORTHO05D002300 2.2e-06 58.5 67 43.3
Pp3c7_17700 Physcomitrium patens HOM05D000233 ORTHO05D017315 2.2e-06 58.5 523 22.0
ECA234G0409 Erigeron canadensis HOM05D000497 ORTHO05D002300 2.8e-06 58.2 69 40.6
Peaxi162Scf01066g00013 Petunia axillaris HOM05D000233 ORTHO05D000020 2.8e-06 58.2 74 41.9
Psat2g082880 Pisum sativum HOM05D000497 ORTHO05D002300 2.8e-06 58.2 124 34.7
unitig_52.g17136 Utricularia gibba HOM05D000497 ORTHO05D002300 2.8e-06 58.2 62 50.0
SalBow8G2743 Salvia bowleyana HOM05D007283 ORTHO05D010540 3.7e-06 57.8 59 45.8
Sp1g36010 Schrenkiella parvula HOM05D000497 ORTHO05D018466 3.7e-06 57.8 82 40.2
VMungo0464G1504 Vigna mungo HOM05D016665 ORTHO05D017046 3.7e-06 57.8 58 50.0
MSTRG.2238 Avicennia marina HOM05D000497 ORTHO05D002300 4.8e-06 57.4 110 35.5
CDE02G4713 Ceratophyllum demersum HOM05D000233 ORTHO05D000020 4.8e-06 57.4 226 27.9
ClCG08G005320 Citrullus lanatus HOM05D000497 ORTHO05D002300 4.8e-06 57.4 47 55.3
CsaV3_3G011230 Cucumis sativus L. HOM05D000245 ORTHO05D002300 4.8e-06 57.4 65 43.1
Dinv28094 Davidia involucrata HOM05D000497 ORTHO05D002300 4.8e-06 57.4 56 55.4
Lj3E1016G0 Lonicera japonica HOM05D000497 ORTHO05D002300 4.8e-06 57.4 62 46.8
Aa31sc621G10 Aethionema arabicum HOM05D000497 ORTHO05D002300 6.3e-06 57.0 183 33.3
A09p39470 Brassica napus HOM05D000497 ORTHO05D002300 6.3e-06 57.0 69 43.5
BraA09t39446Z Brassica rapa HOM05D021722 ORTHO05D002300 6.3e-06 57.0 69 43.5
Dinv09800 Davidia involucrata HOM05D000497 ORTHO05D002300 6.3e-06 57.0 106 36.8
Lalb_Chr21g0308961 Lupinus albus HOM05D000497 ORTHO05D002300 6.3e-06 57.0 76 43.4
Rhsim08G0135200 Rhododendron simsii HOM05D000497 ORTHO05D002300 6.3e-06 57.0 95 33.7
THA.LOC104821840 Tarenaya hassleriana HOM05D000233 ORTHO05D018466 6.3e-06 57.0 52 48.1
C05p24970 Brassica napus HOM05D000497 ORTHO05D002300 8.2e-06 56.6 64 42.2
CAN.G2066.2 Capsicum annuum HOM05D007283 ORTHO05D022165 8.2e-06 56.6 119 39.5
Lalb_Chr02g0146021 Lupinus albus HOM05D000497 ORTHO05D002300 8.2e-06 56.6 59 49.2
Nitab4.5_0005886g0010 Nicotiana tabacum HOM05D000497 ORTHO05D002300 8.2e-06 56.6 87 40.2
Sed0014784 Sechium edule HOM05D000497 ORTHO05D002300 8.2e-06 56.6 109 36.7
PGSC0003DMG400014541 Solanum tuberosum HOM05D000497 ORTHO05D002300 8.2e-06 56.6 133 32.3


User provided reference genes

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