Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 6.1e-106 387.5 197 100.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.0e-104 382.5 197 99.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.0e-104 382.5 197 99.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.9e-87 325.5 197 85.8
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.3e-83 311.6 197 84.3
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.0e-76 290.4 195 80.0
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.7e-76 289.7 301 57.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 7.6e-72 274.2 161 86.3
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.5e-69 265.4 195 72.8
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 6.0e-69 264.6 189 74.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.0e-68 263.8 170 79.4
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.0e-68 263.8 203 70.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.3e-68 263.5 213 70.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.3e-68 263.5 204 70.6
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.7e-68 263.1 204 70.1
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-68 262.3 200 74.0
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.1e-68 261.5 220 68.2
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.5e-67 260.0 194 73.2
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 2.5e-67 259.2 207 69.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.3e-67 258.5 207 69.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.3e-67 258.5 160 82.5
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 5.6e-67 258.1 195 70.8
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.3e-66 256.9 190 72.1
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.6e-66 256.5 205 69.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.6e-66 256.5 205 69.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.6e-66 256.5 206 68.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.6e-66 255.4 186 73.7
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-66 255.0 198 70.2
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 6.2e-66 254.6 204 68.1
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 6.2e-66 254.6 204 68.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 6.2e-66 254.6 205 67.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 8.1e-66 254.2 217 65.9
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-65 253.8 198 69.2
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.1e-65 253.8 204 68.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.4e-65 253.4 204 67.6
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-65 253.4 204 68.1
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.4e-65 253.4 204 69.6
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 2.4e-65 252.7 195 70.8
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.4e-65 252.7 194 70.6
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.4e-65 252.7 161 77.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-65 252.3 205 67.8
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 3.1e-65 252.3 205 68.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 3.1e-65 252.3 205 68.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 3.1e-65 252.3 205 68.3
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.1e-65 252.3 176 74.4
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 6.9e-65 251.1 196 69.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.9e-65 251.1 209 66.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 9.0e-65 250.8 203 65.5
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 9.0e-65 250.8 199 71.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 9.0e-65 250.8 206 68.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-64 250.4 155 80.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.5e-64 250.0 164 76.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.0e-64 249.6 198 68.2
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.0e-64 249.6 164 76.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.0e-64 249.6 199 68.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.6e-64 249.2 199 71.4
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.4e-64 248.8 206 67.5
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.4e-64 248.4 212 64.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 7.6e-64 247.7 197 67.5
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 9.9e-64 247.3 190 67.9
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.3e-63 246.9 160 77.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.3e-63 246.9 186 71.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.3e-63 246.9 204 67.6
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.2e-63 246.1 198 69.7
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.2e-63 246.1 204 66.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 4.9e-63 245.0 199 65.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.9e-63 245.0 199 68.3
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 4.9e-63 245.0 195 68.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 8.4e-63 244.2 197 66.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.1e-62 243.8 188 70.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.4e-62 243.4 200 67.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.9e-62 243.0 152 78.9
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.9e-62 243.0 201 67.7
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.4e-62 242.7 218 64.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.4e-62 242.7 197 68.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.4e-62 242.7 215 64.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.2e-62 242.3 208 64.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 3.2e-62 242.3 199 67.8
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.2e-62 241.9 191 69.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.4e-62 241.5 184 68.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 9.3e-62 240.7 210 66.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 9.3e-62 240.7 189 67.2
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-61 240.4 184 69.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.2e-61 240.4 201 66.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.6e-61 240.0 191 69.1
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-61 240.0 190 68.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-61 240.0 191 69.1
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-61 240.0 191 69.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-61 240.0 215 63.3
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-61 239.6 184 69.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-61 239.6 184 69.6
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.7e-61 239.2 191 68.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.5e-61 238.8 191 67.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 4.6e-61 238.4 204 64.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.9e-60 235.3 180 67.8
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.1e-60 235.0 205 63.4
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.7e-60 234.2 202 65.3
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.5e-59 233.4 155 74.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.9e-59 233.0 202 65.3
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 7.3e-59 231.1 203 63.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-58 230.3 200 65.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-58 229.9 193 66.3
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.1e-58 227.6 199 64.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.4e-57 226.9 208 63.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.8e-57 226.5 203 65.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.4e-56 222.2 204 62.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.5e-56 221.9 201 63.2
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 5.8e-56 221.5 261 51.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.7e-55 219.9 123 87.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.1e-54 217.2 200 63.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-54 216.1 213 58.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.9e-53 211.1 184 63.6
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.3e-52 209.5 205 58.0
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.5e-51 206.8 199 60.8
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.9e-51 206.5 187 62.0
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 9.6e-51 204.1 148 70.3
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 6.2e-50 201.4 122 79.5
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.1e-49 199.1 124 75.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 5.3e-49 198.4 124 75.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.5e-48 196.8 204 55.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.5e-48 195.3 201 58.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.5e-48 195.3 201 58.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.1e-45 186.4 102 90.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 8.7e-44 181.0 120 74.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.4e-43 177.9 210 53.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.3e-42 177.2 145 63.4
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.0e-39 165.2 93 84.9
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.5e-38 162.9 156 60.3
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.7e-35 151.8 115 61.7
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 7.4e-35 151.4 81 92.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.7e-34 149.1 131 54.2
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 3.7e-34 149.1 217 50.2
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.2e-32 144.1 200 45.5
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.2e-32 144.1 193 45.6
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.2e-32 144.1 106 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 7.7e-32 141.4 115 57.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 7.9e-29 131.3 187 43.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-26 122.5 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-26 122.5 67 86.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.8e-25 120.2 80 73.8
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.0e-20 104.4 130 52.3
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.3e-19 99.4 70 70.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.8e-18 96.3 134 48.5
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.5e-14 82.0 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.9e-12 75.9 157 33.8
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 5.0e-07 58.9 38 73.7
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.5e-06 57.4 111 38.7


User provided reference genes

Program Settings