Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1498.4 732 100.0
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1487.2 732 99.0
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1449.1 732 95.8
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1437.9 732 94.9
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1428.7 724 95.4
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1424.5 697 99.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1357.4 732 89.2
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1355.5 732 91.0
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1354.7 732 88.4
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1349.3 730 88.5
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1344.3 732 88.0
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1343.6 733 87.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1342.0 732 88.1
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1335.1 732 87.7
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1331.6 732 87.6
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1328.9 731 86.9
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1327.4 732 86.9
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1317.4 730 85.6
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1317.0 732 85.5
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1315.8 730 85.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1315.8 732 85.4
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1315.1 744 85.6
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 730 85.3
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 730 85.3
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 732 85.4
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 732 85.8
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1313.1 734 84.7
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 732 86.1
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 733 86.1
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 732 85.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 733 85.5
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 732 85.7
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1309.7 774 82.3
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1309.3 734 85.4
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 733 84.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 732 86.2
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 734 85.1
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 734 85.7
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1306.6 730 85.1
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 782 81.6
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1303.1 733 85.3
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1302.3 732 84.7
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1302.0 733 85.7
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 732 85.7
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1299.6 734 85.0
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 733 85.1
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1297.3 735 83.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1295.0 732 84.8
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1295.0 733 85.4
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1294.3 733 84.3
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1293.1 734 84.1
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1293.1 779 80.7
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1293.1 779 80.7
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1292.7 732 85.0
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 734 84.3
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 730 84.8
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1287.7 732 84.4
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1286.9 776 81.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 749 83.4
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 732 84.4
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1282.7 734 83.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 732 83.7
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 732 83.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 732 83.5
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 733 83.4
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 733 83.5
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1273.1 734 83.1
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 734 83.4
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 732 82.1
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 726 82.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1269.6 732 82.7
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 733 82.9
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 732 82.1
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 732 82.7
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 732 82.1
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 732 82.0
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 734 82.8
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 732 82.5
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 82.0
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 732 82.2
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 82.4
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 82.0
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1262.3 732 82.2
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1262.3 732 82.0
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 732 82.4
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 732 82.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1260.4 732 82.4
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1260.4 730 83.8
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 732 81.6
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1259.2 732 82.2
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 734 81.6
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1249.6 734 81.6
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1243.8 830 74.6
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1238.4 732 81.3
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1227.2 705 82.4
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 744 79.7
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1224.5 744 79.8
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 732 81.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1222.6 736 79.3
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1220.7 743 79.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1219.1 733 78.9
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 732 80.7
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1214.5 751 77.8
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 727 79.4
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 663 85.8
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1200.3 735 79.3
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 735 79.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1174.8 667 84.4
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1168.7 659 84.4
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1167.5 714 77.2
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1157.5 741 74.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1157.1 733 75.6
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1135.9 707 75.8
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1129.8 616 87.7
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1122.1 734 73.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1119.4 696 76.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1110.9 616 86.7
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1083.9 585 88.7
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1076.2 732 73.2
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 2.0e-311 1072.0 734 71.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.3e-307 1058.5 706 72.7
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 4.1e-304 1047.7 752 70.3
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.6e-284 981.5 733 64.8
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.8e-283 979.2 713 65.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.7e-281 971.5 701 68.6
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 3.1e-280 968.4 736 64.3
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.7e-257 891.7 506 85.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.6e-255 886.3 690 61.4
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.8e-254 881.7 656 64.3
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.3e-253 878.6 670 63.3
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 2.8e-252 875.5 568 75.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.7e-249 865.1 697 60.7
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 3.6e-236 822.0 702 58.0
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 7.1e-232 807.7 783 53.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.0e-230 802.4 502 77.7
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 5.6e-213 745.0 417 85.9
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.1e-205 720.7 710 51.7
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.3e-181 639.4 422 73.5
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 7.5e-157 558.5 365 72.9
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.8e-150 537.3 303 86.1
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.1e-147 526.2 317 78.9
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.1e-147 526.2 358 71.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.5e-144 516.9 345 74.8
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 8.6e-137 491.9 349 73.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.6e-128 462.6 338 66.6
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.3e-113 414.8 288 69.4
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.3e-108 398.3 314 63.1
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.9e-92 343.2 183 82.5
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.7e-90 337.4 219 71.7
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 1.3e-79 302.0 425 45.4
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 7.9e-74 282.7 221 66.5
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.8e-73 281.6 353 47.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.5e-72 277.7 168 74.4
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-68 263.5 204 68.1
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.5e-67 261.2 215 60.9
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 7.2e-51 206.5 206 56.3
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 9.1e-46 189.5 207 54.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 4.5e-45 187.2 101 78.2
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.9e-45 186.8 219 44.7
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 8.5e-44 183.0 101 78.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.8e-33 146.7 80 76.2
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 2.6e-32 144.8 162 53.7
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 5.7e-32 143.7 139 55.4
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 2.3e-25 121.7 108 59.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.0e-24 118.6 127 57.5
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.7e-23 114.4 188 37.8
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 6.4e-23 113.6 188 37.8
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.0e-22 110.2 63 71.4
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.6e-21 109.0 60 83.3
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 7.8e-21 106.7 110 57.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.9e-19 102.1 111 50.5
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-17 95.9 54 77.8
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-13 82.4 74 58.1
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-13 82.0 73 58.9
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 8.6e-12 76.6 50 78.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 7.3e-11 73.6 45 82.2
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.1e-09 69.7 41 75.6
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 5.8e-08 63.9 34 88.2
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 9.8e-08 63.2 44 79.5


User provided reference genes

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