Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 4.4e-272 940.6 465 100.0
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 6.3e-202 707.6 419 86.6
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.4e-201 705.7 419 86.4
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.6e-197 693.0 462 78.6
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 3.7e-186 655.2 493 72.2
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 1.6e-184 649.8 413 81.4
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.9e-182 642.9 373 86.1
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 7.5e-179 630.9 375 82.7
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 7.5e-179 630.9 375 82.7
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.2e-178 629.4 419 75.9
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 4.9e-178 628.2 419 76.1
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.4e-177 625.9 413 77.2
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.1e-177 625.2 420 76.4
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 2.7e-176 622.5 419 75.9
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.7e-176 622.5 419 74.9
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 2.7e-176 622.5 419 76.1
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.0e-175 620.5 419 75.4
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.3e-175 620.2 422 76.1
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.0e-175 619.0 375 81.1
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.6e-175 617.8 417 76.0
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 8.6e-175 617.5 419 75.2
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.5e-174 616.7 419 75.4
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.5e-174 616.7 417 76.0
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 1.9e-174 616.3 419 74.9
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 2.5e-174 615.9 419 75.4
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 2.5e-174 615.9 419 75.9
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 4.3e-174 615.1 417 75.5
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 5.6e-174 614.8 419 74.5
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 7.3e-174 614.4 419 74.2
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.2e-173 613.6 417 75.8
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 1.6e-173 613.2 419 74.5
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 3.6e-173 612.1 419 73.5
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 3.6e-173 612.1 419 74.2
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 3.6e-173 612.1 419 74.5
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 8.1e-173 610.9 417 74.3
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 8.1e-173 610.9 417 74.3
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.1e-172 610.5 417 74.1
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.8e-172 609.8 419 74.2
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 2.3e-172 609.4 419 74.0
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 4.0e-172 608.6 419 74.0
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 4.0e-172 608.6 419 73.0
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 5.2e-172 608.2 417 75.1
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 8.9e-172 607.4 419 74.5
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 2.0e-171 606.3 443 71.3
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 2.6e-171 605.9 419 73.3
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.4e-171 605.5 419 73.5
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.4e-171 605.5 419 74.2
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 4.4e-171 605.1 419 74.0
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 7.5e-171 604.4 419 74.5
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 9.8e-171 604.0 425 72.5
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 8.3e-170 600.9 413 73.6
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.1e-169 600.5 398 76.4
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.2e-169 599.0 416 73.1
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 3.2e-169 599.0 441 70.1
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 6.0e-168 594.7 419 72.3
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 1.0e-167 594.0 419 71.8
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.3e-167 593.6 419 71.1
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 2.3e-167 592.8 419 71.4
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 3.0e-167 592.4 419 71.8
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 5.1e-167 591.7 476 66.0
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 6.6e-167 591.3 419 72.1
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 8.6e-167 590.9 419 71.8
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.9e-166 589.7 418 71.8
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 2.5e-166 589.3 419 71.1
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 2.5e-166 589.3 419 70.9
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 2.5e-166 589.3 436 70.0
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 3.6e-165 585.5 417 71.2
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 4.7e-165 585.1 419 71.1
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 6.2e-165 584.7 419 71.1
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 6.2e-165 584.7 419 70.9
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 8.1e-165 584.3 417 71.5
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 8.1e-165 584.3 417 71.7
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.4e-164 583.6 418 71.1
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.4e-164 583.6 419 71.6
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 2.3e-164 582.8 428 70.3
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 3.1e-164 582.4 378 78.3
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 4.0e-164 582.0 417 71.7
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 4.0e-164 582.0 417 71.5
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 8.9e-164 580.9 417 71.2
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 8.9e-164 580.9 415 71.3
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.0e-163 579.7 415 71.1
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.0e-163 579.7 419 70.9
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 3.4e-163 578.9 416 71.2
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 4.4e-163 578.6 414 71.0
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 4.4e-163 578.6 414 71.0
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 5.8e-163 578.2 419 70.4
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 7.6e-163 577.8 419 70.9
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 3.7e-162 575.5 408 71.6
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 6.4e-162 574.7 416 71.2
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 3.9e-159 565.5 412 71.4
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 3.9e-159 565.5 392 74.7
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 8.6e-159 564.3 377 76.4
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 8.6e-159 564.3 419 68.5
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.1e-158 563.9 390 75.4
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 7.3e-158 561.2 425 68.7
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 2.6e-155 552.7 386 73.8
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 9.9e-155 550.8 419 67.5
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-154 550.4 419 67.3
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 3.8e-154 548.9 417 67.6
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 7.3e-150 534.6 418 66.0
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 7.3e-150 534.6 410 68.8
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 1.8e-148 530.0 389 70.7
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 2.2e-146 523.1 419 62.3
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 9.3e-145 517.7 413 63.2
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 7.9e-144 514.6 419 64.2
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 3.0e-143 512.7 356 72.8
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 7.3e-142 508.1 348 74.1
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 3.6e-141 505.8 374 69.8
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 9.0e-140 501.1 260 93.8
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 3.4e-139 499.2 376 68.9
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 3.5e-136 489.2 353 70.8
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 4.6e-136 488.8 387 68.0
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 5.5e-129 465.3 417 60.4
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 7.9e-128 461.5 355 67.9
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 5.1e-127 458.8 260 85.8
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.8e-124 450.3 420 55.7
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 4.1e-124 449.1 260 85.4
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 6.7e-119 431.8 387 61.2
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 2.5e-118 429.9 222 95.0
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.1e-113 414.5 225 88.0
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 2.3e-111 406.8 289 75.8
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 5.1e-111 405.6 309 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 1.5e-110 404.1 328 63.1
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 4.3e-110 402.5 232 84.9
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 1.7e-106 390.6 249 80.7
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 6.1e-104 382.1 222 82.9
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 1.4e-100 370.9 429 49.0
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.4e-92 344.4 216 81.0
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 3.5e-91 339.7 446 43.7
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 1.7e-90 337.4 186 87.6
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 4.7e-88 329.3 453 42.8
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.5e-86 324.3 269 66.2
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-84 318.2 188 80.3
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 1.6e-83 314.3 213 75.1
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 8.5e-82 308.5 357 46.2
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 1.4e-76 291.2 269 60.6
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 2.4e-76 290.4 284 57.7
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.6e-72 277.7 225 66.7
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 1.4e-71 274.6 423 38.5
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 2.0e-67 260.8 255 56.9
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 4.1e-60 236.5 140 80.0
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.7e-51 207.2 198 58.1
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 3.3e-49 200.3 208 53.8
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.1e-44 185.3 191 57.6
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 4.1e-44 183.3 210 54.3
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 9.2e-44 182.2 202 51.5
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 1.6e-32 144.8 111 64.0
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 2.8e-32 144.1 124 59.7
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 3.1e-31 140.6 111 64.0
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 2.1e-24 117.9 90 66.7
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.4e-23 115.2 114 54.4
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.4e-23 115.2 114 54.4
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 4.9e-21 106.7 57 87.7
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 1.1e-20 105.5 87 64.4
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 9.3e-20 102.4 75 72.0
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 3.5e-19 100.5 70 67.1
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 5.6e-17 93.2 76 57.9
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 2.4e-15 87.8 63 68.3
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 4.0e-15 87.0 64 68.8
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 6.5e-13 79.7 77 50.6
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 3.5e-11 73.9 279 28.3
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.5e-09 67.8 32 90.6
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 4.3e-09 67.0 277 27.1
Nn1g09042 Nelumbo nucifera HOM05D002124 ORTHO05D004058 2.6e-06 57.8 107 36.4


User provided reference genes

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