Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 4.9e-39 164.1 87 100.0
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 1.6e-37 159.1 89 97.8
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 1.6e-37 159.1 89 94.4
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 3.9e-28 127.9 89 78.7
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 5.1e-28 127.5 83 74.7
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 5.1e-28 127.5 84 75.0
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 5.1e-28 127.5 87 78.2
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 3.3e-27 124.8 88 73.9
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 3.3e-27 124.8 86 77.9
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 4.3e-27 124.4 83 73.5
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 5.6e-27 124.0 88 75.0
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 9.5e-27 123.2 87 71.3
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 6.8e-25 117.1 78 74.4
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 1.2e-24 116.3 88 71.6
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 1.2e-24 116.3 83 69.9
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 1.2e-24 116.3 83 69.9
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 7.5e-24 113.6 86 66.3
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 7.5e-24 113.6 84 69.0
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 3.7e-23 111.3 87 70.1
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 3.7e-23 111.3 87 70.1
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 3.2e-22 108.2 83 65.1
CAN.G567.112 Capsicum annuum HOM05D007599 ORTHO05D009548 7.1e-22 107.1 87 74.7
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 3.5e-21 104.8 85 60.0
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 3.5e-21 104.8 123 48.8
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 1.3e-20 102.8 84 65.5
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 1.3e-20 102.8 85 65.9
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 3.0e-20 101.7 88 62.5
TPR.G21312 Trifolium pratense HOM05D007599 ORTHO05D009548 3.9e-20 101.3 84 57.1
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 5.1e-20 100.9 87 58.6
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 1.1e-19 99.8 84 57.1
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 3.3e-19 98.2 110 50.9
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 9.5e-19 96.7 85 61.2
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 2.6e-16 88.6 67 68.7
FvH4_5g07140 Fragaria vesca HOM05D007599 ORTHO05D009548 3.4e-16 88.2 77 54.5
RcHm_v2.0_Chr7g0187811 Rosa chinensis HOM05D007599 ORTHO05D009548 1.3e-15 86.3 82 56.1
FAN08G0181 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.2e-15 85.5 143 39.2
Rhsim02G0254600 Rhododendron simsii HOM05D007599 ORTHO05D009548 4.9e-15 84.3 74 63.5
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 6.4e-15 84.0 88 52.3
Nitab4.5_0000357g0300 Nicotiana tabacum HOM05D007599 ORTHO05D009548 6.4e-15 84.0 87 59.8
FAN08G0537 Fragaria x ananassa HOM05D007599 ORTHO05D009548 8.4e-15 83.6 75 53.3
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.1e-14 83.2 86 52.3
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.4e-14 82.8 86 52.3
Cre16.g650800 Chlamydomonas reinhardtii HOM05D007599 ORTHO05D009548 1.9e-14 82.4 83 43.4
FvH4_5g10420 Fragaria vesca HOM05D007599 ORTHO05D009548 1.9e-14 82.4 82 56.1
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 3.2e-14 81.6 48 81.2
FAN13G2393 Fragaria x ananassa HOM05D007599 ORTHO05D009548 4.2e-14 81.3 75 52.0
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 9.2e-14 80.1 85 56.5
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 1.2e-13 79.7 87 56.3
Os01g0932550 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 2.1e-13 79.0 47 76.6
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 3.5e-13 78.2 85 55.3
CANSAT21G1781 Cannabis sativa HOM05D007599 ORTHO05D009548 4.6e-13 77.8 85 54.1
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 6.0e-13 77.4 84 57.1
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 6.0e-13 77.4 86 53.5
TWI81G0432 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 6.0e-13 77.4 83 56.6
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 7.8e-13 77.0 84 54.8
MCO15G174 Micromonas commoda HOM05D007599 ORTHO05D009548 7.8e-13 77.0 60 55.0
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 2.3e-12 75.5 85 52.9
PRCOL_00005458 Prasinoderma coloniale HOM05D007599 ORTHO05D009548 3.0e-12 75.1 63 47.6
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 3.9e-12 74.7 81 56.8
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 8.7e-12 73.6 89 49.4
FAN13G0770 Fragaria x ananassa HOM05D007599 ORTHO05D009548 8.7e-12 73.6 82 53.7
FAN04G0849 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.1e-11 73.2 82 52.4
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 1.9e-11 72.4 84 44.0
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 1.9e-11 72.4 88 50.0
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 1.9e-11 72.4 88 50.0
TWI60G1211 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 2.5e-11 72.0 83 54.2
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 3.3e-11 71.6 87 55.2
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 9.6e-11 70.1 86 48.8
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 1.3e-10 69.7 84 48.8
CBR_g48723 Chara braunii HOM05D007599 ORTHO05D009548 4.8e-10 67.8 85 47.1
SHI06900 Sapria himalayana HOM05D007599 ORTHO05D009548 1.1e-09 66.6 46 63.0
CARHR050820 Cardamine hirsuta HOM05D007599 ORTHO05D009548 6.9e-09 63.9 84 44.0
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 9.0e-09 63.5 86 47.7
Haze_09213 Corylus avellana HOM05D007599 ORTHO05D009548 1.2e-08 63.2 86 48.8
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 3.4e-08 61.6 64 54.7
C06p32780 Brassica napus HOM05D007599 ORTHO05D009548 4.4e-08 61.2 88 44.3
Nitab4.5_0002520g0020 Nicotiana tabacum HOM05D007599 ORTHO05D009548 5.8e-08 60.8 87 49.4
AL1G56360 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 7.6e-08 60.5 37 78.4
BolC6t38400H Brassica oleracea HOM05D007599 ORTHO05D009548 7.6e-08 60.5 84 44.0
BcaC08g46942 Brassica carinata HOM05D007599 ORTHO05D009548 1.3e-07 59.7 83 43.4
C06p49140 Brassica napus HOM05D007599 ORTHO05D009548 1.3e-07 59.7 83 43.4
BolC6t39948H Brassica oleracea HOM05D001180 ORTHO05D001055 1.3e-07 59.7 83 43.4
BcaNung06629 Brassica carinata HOM05D007599 ORTHO05D009548 1.7e-07 59.3 89 44.9
Aa31LG9G70 Aethionema arabicum HOM05D007599 ORTHO05D009548 2.2e-07 58.9 87 46.0
BcaB02g07013 Brassica carinata HOM05D007599 ORTHO05D009548 3.8e-07 58.2 89 43.8
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 4.9e-07 57.8 85 48.2
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 4.9e-07 57.8 85 48.2
A07p29010 Brassica napus HOM05D007599 ORTHO05D009548 6.4e-07 57.4 88 43.2
BraA07t30541Z Brassica rapa HOM05D007599 ORTHO05D009548 6.4e-07 57.4 88 43.2
Haze_27758 Corylus avellana HOM05D007599 ORTHO05D009548 4.2e-06 54.7 64 35.9
arahy.Tifrunner.gnm1.ann1.D7JHHW Arachis hypogaea HOM05D060794 ORTHO05D009548 9.3e-06 53.5 83 43.4
arahy.Tifrunner.gnm1.ann1.Y4V2H1 Arachis hypogaea HOM05D060794 ORTHO05D009548 9.3e-06 53.5 83 43.4


User provided reference genes

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