Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 9.4e-227 790.8 768 100.0
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 3.5e-181 639.4 770 83.4
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 8.1e-170 601.7 729 78.7
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.1e-65 255.8 771 34.2
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 5.1e-55 220.3 774 32.7
CAN.G62.40 Capsicum annuum HOM05D020458 ORTHO05D022160 1.5e-54 218.8 436 52.3
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 8.4e-26 123.2 162 42.6
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.9e-22 112.1 143 44.1
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 7.4e-22 110.2 157 40.8
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.3e-21 109.4 145 42.8
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 1.6e-21 109.0 155 43.2
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 4.8e-21 107.5 128 45.3
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 6.2e-21 107.1 126 44.4
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.1e-20 106.3 129 44.2
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 6.5e-18 97.1 127 43.3
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.1e-17 96.3 157 38.2
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 1.9e-17 95.5 130 42.3
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 2.5e-17 95.1 143 41.3
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 5.5e-17 94.0 156 39.7
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 7.1e-17 93.6 131 41.2
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.0e-15 89.7 179 36.3
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 5.1e-15 87.4 147 37.4
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 6.7e-15 87.0 131 37.4
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 8.7e-15 86.7 91 44.0
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 1.9e-14 85.5 147 36.7
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 4.3e-14 84.3 148 37.2
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 5.7e-14 84.0 117 37.6
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 7.4e-14 83.6 106 41.5
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 9.6e-14 83.2 108 36.1
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.3e-13 82.8 126 36.5
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-13 82.8 108 41.7
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 3.7e-13 81.3 91 41.8
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.7e-13 81.3 101 41.6
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 4.8e-13 80.9 101 41.6
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 8.2e-13 80.1 109 38.5
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.2e-13 80.1 108 35.2
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.4e-12 79.3 708 23.3
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.8e-12 79.0 123 35.8
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.8e-12 79.0 101 43.6
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 1.8e-12 79.0 124 36.3
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.8e-12 79.0 104 38.5
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 3.1e-12 78.2 171 32.2
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.1e-12 77.8 108 35.2
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 5.3e-12 77.4 114 37.7
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 6.9e-12 77.0 99 38.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 9.0e-12 76.6 122 33.6
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 1.2e-11 76.3 131 35.1
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.5e-11 75.9 108 34.3
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.6e-11 75.1 110 37.3
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 2.6e-11 75.1 110 37.3
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 3.4e-11 74.7 112 34.8
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 7.6e-11 73.6 110 37.3
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 7.6e-11 73.6 119 32.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.7e-10 72.4 117 34.2
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.7e-10 72.4 118 34.7
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.7e-10 72.4 118 34.7
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 3.8e-10 71.2 112 33.9
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.5e-10 70.5 117 34.2
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.4e-10 70.1 137 32.1
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 8.4e-10 70.1 121 33.9
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.1e-09 69.7 163 30.7
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.4e-09 69.3 102 35.3
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.5e-09 68.6 144 30.6
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.5e-09 67.4 118 33.1
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.2e-08 66.2 96 38.5
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.6e-08 65.9 139 33.8
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.7e-08 65.1 124 33.1
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 2.7e-08 65.1 130 33.8
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 2.7e-08 65.1 136 31.6
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 3.6e-08 64.7 52 48.1
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 6.1e-08 63.9 94 38.3
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 7.9e-08 63.5 75 38.7
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.3e-07 62.8 82 37.8
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.3e-07 62.8 139 34.5
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 2.3e-07 62.0 98 37.8
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 3.0e-07 61.6 98 37.8
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 5.1e-07 60.8 99 37.4
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 6.7e-07 60.5 80 42.5
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 6.7e-07 60.5 83 37.3
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 8.7e-07 60.1 158 29.7
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.1e-06 59.7 109 32.1
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 2.5e-06 58.5 144 34.7
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 5.7e-06 57.4 99 30.3
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 5.7e-06 57.4 123 34.1
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 7.4e-06 57.0 116 32.8
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 7.4e-06 57.0 99 30.3
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 9.7e-06 56.6 113 33.6


User provided reference genes

Program Settings