Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 0.0e+00 1140.2 552 100.0
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 0.0e+00 1114.0 551 98.0
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 0.0e+00 1095.5 552 94.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 0.0e+00 1088.9 534 98.3
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.3e-310 1068.9 552 91.5
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-308 1062.0 552 90.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 552 87.0
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 553 86.4
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 552 86.6
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 4.6e-295 1017.3 552 86.2
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.0e-294 1016.1 552 86.4
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 552 86.2
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 552 86.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.5e-293 1011.5 552 86.8
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.3e-293 1011.1 552 84.8
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 552 86.4
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 7.3e-293 1010.0 552 85.5
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 552 86.2
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 552 85.9
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 550 86.4
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 552 85.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 6.2e-292 1006.9 552 86.4
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.1e-291 1006.1 552 85.9
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 552 85.0
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 552 85.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 3.1e-291 1004.6 552 85.3
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 552 85.5
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 8.9e-291 1003.0 552 85.5
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 8.9e-291 1003.0 552 85.5
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 552 85.5
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 552 85.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 552 84.6
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 552 85.3
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.4e-290 1000.7 552 85.3
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.4e-290 1000.7 552 85.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 5.8e-290 1000.3 552 85.3
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.3e-289 999.2 552 86.1
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-289 999.2 552 85.1
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.7e-289 998.8 552 85.1
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.9e-289 998.0 552 85.3
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.9e-288 995.3 552 85.0
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.4e-288 995.0 552 84.6
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 7.0e-288 993.4 552 84.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 9.2e-288 993.0 552 85.3
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.2e-287 992.6 552 84.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.6e-287 992.3 552 85.0
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.7e-287 991.5 552 85.0
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.5e-287 991.1 552 84.4
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.5e-287 991.1 552 84.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 4.6e-287 990.7 552 85.0
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 4.6e-287 990.7 552 85.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 7.8e-287 989.9 552 84.1
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 7.8e-287 989.9 552 84.6
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.0e-286 989.6 555 85.0
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-286 989.6 552 84.6
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.0e-286 989.6 552 85.1
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.6e-286 986.9 552 84.4
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.5e-285 985.7 552 84.2
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.9e-285 985.3 552 84.2
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.3e-285 984.6 552 83.2
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.6e-284 982.2 550 84.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.6e-284 982.2 552 84.4
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.1e-284 981.9 549 84.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 8.1e-284 979.9 552 83.3
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 8.1e-284 979.9 552 83.3
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 8.1e-284 979.9 552 82.8
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-283 979.5 549 84.5
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 2.3e-283 978.4 553 83.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 4.0e-283 977.6 552 82.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 6.8e-283 976.9 552 83.3
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 6.8e-283 976.9 552 83.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.5e-282 975.7 550 83.1
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.1e-280 969.5 552 82.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.4e-280 969.1 552 81.7
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.8e-279 963.4 553 83.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.0e-278 963.0 552 81.2
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.7e-278 962.2 545 83.5
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.7e-278 962.2 551 81.5
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.3e-278 961.8 553 82.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.3e-278 961.8 553 82.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.6e-278 959.9 554 82.3
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 7.3e-277 956.8 552 80.3
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 9.5e-277 956.4 554 81.9
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.2e-276 956.1 553 82.3
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.1e-276 955.3 554 81.8
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.1e-276 955.3 553 82.1
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 8.1e-276 953.4 555 80.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.4e-275 952.6 553 80.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.4e-275 951.8 552 80.3
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.4e-275 951.8 554 80.5
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.8e-275 950.3 554 80.0
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.2e-274 949.5 556 80.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.0e-274 948.7 552 80.8
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 4.4e-274 947.6 553 81.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 4.4e-274 947.6 553 81.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.6e-274 946.8 552 79.3
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 9.9e-274 946.4 553 80.8
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 9.9e-274 946.4 553 80.8
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 9.9e-274 946.4 553 80.8
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 9.9e-274 946.4 553 80.7
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.7e-273 945.7 553 80.8
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-273 945.3 553 80.5
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.2e-273 945.3 553 80.3
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 2.9e-273 944.9 553 80.7
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.9e-273 944.9 552 80.6
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 6.4e-273 943.7 552 81.2
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-272 943.0 553 80.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-272 943.0 553 80.5
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.1e-272 943.0 553 80.5
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.9e-272 942.2 553 80.3
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.9e-272 942.2 545 81.1
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 9.2e-272 939.9 553 80.3
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.6e-271 939.1 551 80.9
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.5e-271 937.9 552 82.1
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 6.0e-271 937.2 553 79.2
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.7e-270 935.6 553 79.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 6.6e-270 933.7 552 81.9
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 7.3e-269 930.2 553 79.4
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 4.7e-268 927.5 549 80.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 6.2e-268 927.2 553 79.2
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 6.2e-268 927.2 552 78.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 8.1e-268 926.8 553 79.4
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-267 926.0 553 79.0
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.2e-266 922.9 553 78.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.5e-266 922.5 552 78.6
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.4e-265 917.1 554 80.1
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.8e-257 891.3 552 75.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.9e-254 881.3 524 79.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.7e-249 865.9 550 73.1
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-248 862.8 553 74.1
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 4.2e-248 861.3 553 74.7
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 4.2e-248 861.3 553 74.3
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.5e-245 852.0 551 72.6
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.8e-244 848.6 551 72.8
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 8.2e-244 847.0 558 71.5
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.4e-242 841.6 551 72.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.2e-241 839.0 552 74.6
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.2e-233 812.4 456 82.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 5.5e-232 807.7 551 69.3
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.5e-213 746.5 424 84.4
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.4e-211 740.0 425 83.1
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.2e-200 702.2 552 63.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 7.5e-197 691.0 552 62.7
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.5e-189 666.8 373 83.4
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 8.6e-177 624.4 535 55.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.0e-165 586.6 318 83.0
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.3e-164 581.3 522 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.9e-163 580.1 488 54.3
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.3e-161 573.9 417 70.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 7.3e-152 541.6 281 85.4
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.8e-150 537.0 552 54.2
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-148 530.8 552 53.8
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 9.3e-147 524.6 414 58.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 6.7e-129 465.3 319 71.2
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.8e-124 449.5 457 53.8
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.6e-82 311.2 202 72.3
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 3.6e-82 310.1 549 37.0
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 8.3e-79 298.9 493 35.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-62 245.0 142 75.4
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.2e-62 243.8 142 75.4
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 2.3e-60 237.7 166 66.3
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.6e-50 204.9 110 84.5
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.9e-47 193.4 133 72.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.6e-45 188.3 128 74.2
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.0e-44 184.1 117 70.1
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 7.3e-43 179.5 166 58.4
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-42 177.6 166 58.4
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 4.7e-42 176.8 166 58.4
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 5.2e-41 173.3 166 57.8
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.4e-38 165.2 327 33.0
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 6.9e-33 146.4 532 25.2
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.6e-32 142.9 87 72.4
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.4e-31 139.4 79 81.0
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 5.4e-30 136.7 213 41.8
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 3.3e-27 127.5 90 63.3
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.8e-26 124.4 75 70.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 5.4e-22 110.2 184 40.8
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-20 105.9 166 41.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 6.2e-18 96.7 59 66.1
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.0e-12 79.3 46 73.9


User provided reference genes

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