Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011788 Solanum tuberosum HOM05D003842 ORTHO05D004436 1.9e-98 362.5 178 100.0
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 3.6e-12 75.9 93 51.6
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 1.0e-11 74.3 93 51.6
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 1.0e-11 74.3 93 51.6
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 2.3e-11 73.2 93 50.5
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 2.3e-11 73.2 93 49.5
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 3.9e-11 72.4 93 50.5
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 8.8e-11 71.2 93 48.4
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 2.6e-10 69.7 93 47.3
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 4.4e-10 68.9 93 48.4
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 4.4e-10 68.9 93 47.3
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 4.4e-10 68.9 93 47.3
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 5.7e-10 68.6 95 45.3
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 5.7e-10 68.6 95 45.3
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 7.4e-10 68.2 95 46.3
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 9.7e-10 67.8 91 48.4
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 9.7e-10 67.8 93 46.2
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 9.7e-10 67.8 95 45.3
DCAR_020802 Daucus carota HOM05D003842 ORTHO05D004436 1.3e-09 67.4 97 44.3
C04p00360 Brassica napus HOM05D003842 ORTHO05D004436 2.2e-09 66.6 95 44.2
BolC4t21681H Brassica oleracea HOM05D003842 ORTHO05D004436 2.2e-09 66.6 95 44.2
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 3.7e-09 65.9 93 45.2
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 3.7e-09 65.9 95 44.2
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 3.7e-09 65.9 93 45.2
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 4.8e-09 65.5 95 43.2
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 4.8e-09 65.5 93 44.1
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 4.8e-09 65.5 95 44.2
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 6.3e-09 65.1 97 44.3
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 6.3e-09 65.1 91 46.2
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 6.3e-09 65.1 98 44.9
Ciclev10023867m.g Citrus clementina HOM05D003842 ORTHO05D004436 1.1e-08 64.3 91 45.1
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 1.1e-08 64.3 91 45.1
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 1.1e-08 64.3 93 44.1
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 1.4e-08 63.9 93 43.0
Atru.chr8.1720 Acer truncatum HOM05D003842 ORTHO05D004436 1.8e-08 63.5 93 43.0
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 2.4e-08 63.2 93 45.2
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 3.1e-08 62.8 95 43.2
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 3.1e-08 62.8 100 42.0
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 3.1e-08 62.8 91 44.0
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 4.1e-08 62.4 91 42.9
Cpa.g.sc5.147 Carica papaya HOM05D003842 ORTHO05D004436 5.3e-08 62.0 95 43.2
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 5.3e-08 62.0 97 40.2
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.3e-08 62.0 91 42.9
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 7.0e-08 61.6 93 40.9
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 7.0e-08 61.6 91 42.9
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 7.0e-08 61.6 91 42.9
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 7.0e-08 61.6 91 42.9
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 7.0e-08 61.6 93 41.9
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 9.1e-08 61.2 94 43.6
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 9.1e-08 61.2 91 42.9
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 1.2e-07 60.8 93 40.9
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 1.2e-07 60.8 91 44.0
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 1.6e-07 60.5 91 41.8
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 1.6e-07 60.5 91 44.0
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 1.6e-07 60.5 91 44.0
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 1.6e-07 60.5 94 42.6
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 2.0e-07 60.1 93 39.8
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 2.0e-07 60.1 93 39.8
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 2.0e-07 60.1 95 42.1
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 2.0e-07 60.1 95 42.1
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 2.6e-07 59.7 95 41.1
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 3.5e-07 59.3 95 41.1
Gohir.D11G342400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 3.5e-07 59.3 95 41.1
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 3.5e-07 59.3 93 39.8
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 4.5e-07 58.9 95 40.0
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 4.5e-07 58.9 93 40.9
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 4.5e-07 58.9 91 44.0
Gohir.A09G144400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 4.5e-07 58.9 119 36.1
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 4.5e-07 58.9 95 40.0
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 5.9e-07 58.5 101 40.6
Gohir.D09G140200 Gossypium hirsutum HOM05D003842 ORTHO05D004436 5.9e-07 58.5 99 39.4
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 7.7e-07 58.2 91 40.7
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 1.0e-06 57.8 91 41.8
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 1.7e-06 57.0 91 42.9
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 2.2e-06 56.6 91 41.8
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 2.9e-06 56.2 91 42.9
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 3.8e-06 55.8 91 39.6
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 3.8e-06 55.8 92 40.2
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 6.5e-06 55.1 92 40.2
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 6.5e-06 55.1 91 41.8
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 8.5e-06 54.7 91 39.6


User provided reference genes

Program Settings