Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011755 Solanum tuberosum HOM05D002923 ORTHO05D028603 2.4e-53 211.8 103 100.0
Nitab4.5_0009210g0030 Nicotiana tabacum HOM05D002923 ORTHO05D003484 1.3e-11 73.2 146 34.9
Hma1.2p1_0033F.1_g020360 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 7.3e-10 67.4 122 36.1
Peaxi162Scf00056g00313 Petunia axillaris HOM05D002923 ORTHO05D003484 4.8e-09 64.7 33 87.9
Solyc01g094340.3 Solanum lycopersicum HOM05D002923 ORTHO05D003484 4.8e-09 64.7 142 33.8
Sopen01g038130 Solanum pennellii HOM05D002923 ORTHO05D003484 4.8e-09 64.7 142 33.8
AUR62033323 Chenopodium quinoa HOM05D002923 ORTHO05D003484 6.2e-09 64.3 33 84.8
AUR62033336 Chenopodium quinoa HOM05D002923 ORTHO05D003484 6.2e-09 64.3 33 84.8
Migut.O00953 Erythranthe guttata HOM05D002923 ORTHO05D003484 8.1e-09 63.9 33 84.8
Oeu014666.1 Olea europaea HOM05D002923 ORTHO05D003484 8.1e-09 63.9 33 84.8
PGSC0003DMG400000025 Solanum tuberosum HOM05D002923 ORTHO05D003484 8.1e-09 63.9 142 33.1
EL10Ac1g00534 Beta vulgaris HOM05D002923 ORTHO05D003484 1.1e-08 63.5 33 84.8
AUR62004321 Chenopodium quinoa HOM05D002923 ORTHO05D003484 1.1e-08 63.5 33 84.8
Nitab4.5_0002160g0030 Nicotiana tabacum HOM05D002923 ORTHO05D003484 1.1e-08 63.5 142 32.4
ATR0680G246 Amborella trichopoda HOM05D002923 ORTHO05D003484 1.8e-08 62.8 33 81.8
SalBow3G0582 Salvia bowleyana HOM05D002923 ORTHO05D003484 1.8e-08 62.8 33 81.8
ClCG05G001660 Citrullus lanatus HOM05D002923 ORTHO05D003484 2.4e-08 62.4 33 81.8
Cc02_g37720 Coffea canephora HOM05D002923 ORTHO05D003484 2.4e-08 62.4 33 81.8
MELO3C006123.2 Cucumis melo HOM05D002923 ORTHO05D003484 2.4e-08 62.4 33 81.8
Sed0012599 Sechium edule HOM05D002923 ORTHO05D003484 2.4e-08 62.4 33 81.8
ATR0618G266 Amborella trichopoda HOM05D002923 ORTHO05D003484 4.0e-08 61.6 33 78.8
CDE04G0231 Ceratophyllum demersum HOM05D002923 ORTHO05D003484 4.0e-08 61.6 33 78.8
TAR369G0530 Trochodendron aralioides HOM05D002923 ORTHO05D003484 4.0e-08 61.6 33 78.8
TAR623G0856 Trochodendron aralioides HOM05D002923 ORTHO05D003484 4.0e-08 61.6 33 78.8
TAR629G1449 Trochodendron aralioides HOM05D002923 ORTHO05D003484 5.3e-08 61.2 33 78.8
HPP92_003357 Vanilla planifolia HOM05D002923 ORTHO05D003484 5.3e-08 61.2 33 75.8
Nn2g14845 Nelumbo nucifera HOM05D002923 ORTHO05D003484 6.9e-08 60.8 33 78.8
CSS0015910 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
CSS0019607 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
Cpa.g.sc18.229 Carica papaya HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
COL.COLO4_12679 Corchorus olitorius HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
MBI17_g35771_MAGBIO Magnolia biondii HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
PSO478G2799 Papaver somniferum HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
PSO782G3437 Papaver somniferum HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
Potri.014G081000 Populus trichocarpa HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
Sabra14G0058900 Salix brachista HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
TAR374G0869 Trochodendron aralioides HOM05D002923 ORTHO05D003484 9.0e-08 60.5 33 75.8
Lj1g0018566 Lotus japonicus HOM05D002923 ORTHO05D003484 1.2e-07 60.1 33 72.7
GSVIVG01026852001 Vitis vinifera HOM05D002923 ORTHO05D003484 1.2e-07 60.1 33 75.8
Atru.chr5.481 Acer truncatum HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 75.8
Dinv32457 Davidia involucrata HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
FvH4_7g13820 Fragaria vesca HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
FAN01G2587 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
FAN03G1194 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
FAN06G1203 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
FAN06G5053 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
FAN10G1917 Fragaria x ananassa HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
Nn2g13595 Nelumbo nucifera HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 75.8
RcHm_v2.0_Chr1g0354001 Rosa chinensis HOM05D002923 ORTHO05D003484 1.5e-07 59.7 33 72.7
Thecc.01G363000 Theobroma cacao HOM05D002923 ORTHO05D003484 2.0e-07 59.3 33 72.7
CiPaw.02G028800 Carya illinoinensis HOM05D002923 ORTHO05D003484 2.6e-07 58.9 33 69.7
Duzib138G0954 Durio zibethinus HOM05D002923 ORTHO05D003484 2.6e-07 58.9 33 72.7
Sed0023570 Sechium edule HOM05D002923 ORTHO05D003484 2.6e-07 58.9 32 78.1
arahy.Tifrunner.gnm1.ann1.3BKK3V Arachis hypogaea HOM05D002923 ORTHO05D003484 3.4e-07 58.5 33 69.7
arahy.Tifrunner.gnm1.ann1.JYC8LX Arachis hypogaea HOM05D002923 ORTHO05D003484 3.4e-07 58.5 33 69.7
Gohir.A12G105200 Gossypium hirsutum HOM05D002923 ORTHO05D003484 4.5e-07 58.2 33 69.7
Gohir.D12G109100 Gossypium hirsutum HOM05D002923 ORTHO05D003484 4.5e-07 58.2 33 69.7
Gorai.008G118200 Gossypium raimondii HOM05D002923 ORTHO05D003484 4.5e-07 58.2 33 69.7
Eucgr.D02269 Eucalyptus grandis HOM05D002923 ORTHO05D003484 5.8e-07 57.8 33 69.7
DCAR_015460 Daucus carota HOM05D002923 ORTHO05D003484 7.6e-07 57.4 33 75.8
PSO339G5831 Papaver somniferum HOM05D002923 ORTHO05D003484 7.6e-07 57.4 33 69.7
PSO384G4499 Papaver somniferum HOM05D002923 ORTHO05D003484 7.6e-07 57.4 33 69.7
Prupe.2G163900 Prunus persica HOM05D002923 ORTHO05D003484 7.6e-07 57.4 33 72.7
EL10Ac7g17118 Beta vulgaris HOM05D002923 ORTHO05D003484 9.9e-07 57.0 33 72.7
AUR62037670 Chenopodium quinoa HOM05D002923 ORTHO05D003484 9.9e-07 57.0 33 72.7
AUR62041363 Chenopodium quinoa HOM05D002923 ORTHO05D003484 9.9e-07 57.0 33 72.7
Glyma.18G195700 Glycine max HOM05D002923 ORTHO05D003484 9.9e-07 57.0 33 72.7
Glyma.18G195900 Glycine max HOM05D002923 ORTHO05D003484 9.9e-07 57.0 33 72.7
Glyma.18G196000 Glycine max HOM05D002923 ORTHO05D003484 9.9e-07 57.0 33 72.7
MBI05_g03437_MAGBIO Magnolia biondii HOM05D002923 ORTHO05D003484 1.3e-06 56.6 33 75.8
Sc01g0006730 Simmondsia chinensis HOM05D002923 ORTHO05D003484 1.3e-06 56.6 33 72.7
Ah.05g176470 Amaranthus hybridus HOM05D002923 ORTHO05D003484 1.7e-06 56.2 32 68.8
CDE05G0256 Ceratophyllum demersum HOM05D002923 ORTHO05D003484 1.7e-06 56.2 32 71.9
Dinv37086 Davidia involucrata HOM05D002923 ORTHO05D003484 1.7e-06 56.2 33 72.7
QL08p049488 Quercus lobata HOM05D002923 ORTHO05D003484 1.7e-06 56.2 33 66.7
Actinidia13785 Actinidia chinensis HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Actinidia29136 Actinidia chinensis HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
arahy.Tifrunner.gnm1.ann1.45ZUWH Arachis hypogaea HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
arahy.Tifrunner.gnm1.ann1.70V125 Arachis hypogaea HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
MSTRG.26796 Avicennia marina HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 69.7
Ca_26813_v3 Cicer arietinum L. HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Gohir.D13G092201 Gossypium hirsutum HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Gorai.002G148400 Gossypium raimondii HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Lj1g0012741 Lotus japonicus HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Manes.09G101700 Manihot esculenta HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Sabra06G0073700 Salix brachista HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Sabra16G0107100 Salix brachista HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
PGSC0003DMG400020325 Solanum tuberosum HOM05D002923 ORTHO05D003484 2.2e-06 55.8 33 72.7
Ciclev10011119m.g Citrus clementina HOM05D002923 ORTHO05D003484 2.9e-06 55.5 33 69.7
DCAR_018734 Daucus carota HOM05D002923 ORTHO05D003484 2.9e-06 55.5 33 69.7
Duzib128G0471 Durio zibethinus HOM05D002923 ORTHO05D003484 2.9e-06 55.5 33 69.7
Pp3c19_7430 Physcomitrium patens HOM05D002923 ORTHO05D003484 2.9e-06 55.5 33 69.7
PRCOL_00000721 Prasinoderma coloniale HOM05D002923 ORTHO05D003484 2.9e-06 55.5 33 63.6
Ah.12g060020 Amaranthus hybridus HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Aqoxy1G00729 Aquilegia oxysepala HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 72.7
CSS0010473 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
CAN.G284.8 Capsicum annuum HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Dinv35516 Davidia involucrata HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Duzib093G0767 Durio zibethinus HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 66.7
Migut.L01991 Erythranthe guttata HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Hma1.2p1_0244F.1_g101180 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Nitab4.5_0000008g0600 Nicotiana tabacum HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Nitab4.5_0006254g0020 Nicotiana tabacum HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Peaxi162Scf00141g00125 Petunia axillaris HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Solyc09g013080.3 Solanum lycopersicum HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
Sopen09g006920 Solanum pennellii HOM05D002923 ORTHO05D003484 3.8e-06 55.1 33 69.7
MSTRG.19035 Avicennia marina HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
Cpa.g.sc56.107 Carica papaya HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
MELO3C003221.2 Cucumis melo HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
CsaV3_4G025950 Cucumis sativus L. HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
Migut.J00231 Erythranthe guttata HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
MD04G1146400 Malus domestica HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
MD12G1159600 Malus domestica HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
Manes.08G087100 Manihot esculenta HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
Oeu028727.1 Olea europaea HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
Oeu040801.1 Olea europaea HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
Potri.006G095800 Populus trichocarpa HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
Potri.016G110500 Populus trichocarpa HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
Prupe.6G270200 Prunus persica HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
SalBow1G6626 Salvia bowleyana HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
SalBow5G3414 Salvia bowleyana HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
SalBow5G5371 Salvia bowleyana HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
Sed0008698 Sechium edule HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
Sed0027710 Sechium edule HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
SMO137G0057 Selaginella moellendorffii HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 66.7
PGSC0003DMG400010806 Solanum tuberosum HOM05D002923 ORTHO05D028603 4.9e-06 54.7 24 100.0
THA.LOC104805781 Tarenaya hassleriana HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
THA.LOC104806526 Tarenaya hassleriana HOM05D002923 ORTHO05D003484 4.9e-06 54.7 33 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1399 Anthoceros agrestis HOM05D002923 ORTHO05D003484 6.4e-06 54.3 33 66.7
COL.COLO4_14614 Corchorus olitorius HOM05D002923 ORTHO05D003484 6.4e-06 54.3 33 66.7
Mapoly0083s0025 Marchantia polymorpha HOM05D002923 ORTHO05D003484 6.4e-06 54.3 33 66.7
Thecc.05G023000 Theobroma cacao HOM05D002923 ORTHO05D003484 6.4e-06 54.3 33 66.7
CiPaw.10G154100 Carya illinoinensis HOM05D002923 ORTHO05D003484 8.4e-06 53.9 33 63.6
Eucgr.B02770 Eucalyptus grandis HOM05D002923 ORTHO05D003484 8.4e-06 53.9 33 69.7
Lsat_1_v5_gn_9_35780 Lactuca sativa HOM05D002923 ORTHO05D003484 8.4e-06 53.9 33 69.7
Lalb_Chr01g0022891 Lupinus albus HOM05D002923 ORTHO05D003484 8.4e-06 53.9 33 69.7
SGA_v2.0_scaffold106G30526 Striga asiatica HOM05D002923 ORTHO05D003484 8.4e-06 53.9 33 69.7


User provided reference genes

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