Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 4.0e-102 375.2 250 100.0
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 7.8e-82 307.8 259 83.0
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 1.5e-80 303.5 251 85.3
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 9.6e-80 300.8 251 84.9
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.9e-75 286.6 256 72.7
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.4e-67 260.4 256 67.2
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 6.0e-66 255.0 255 66.3
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 7.6e-61 238.0 291 57.7
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 3.2e-59 232.6 259 61.4
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 7.1e-59 231.5 259 61.0
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.1e-58 229.9 259 63.7
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 8.2e-47 191.4 259 54.4
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 1.8e-46 190.3 256 54.7
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 3.1e-46 189.5 257 55.6
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 5.3e-46 188.7 260 55.8
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 2.6e-45 186.4 256 53.9
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 4.5e-45 185.7 252 52.0
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 5.9e-45 185.3 256 50.4
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.7e-44 183.7 256 48.0
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 3.8e-44 182.6 257 57.6
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 3.2e-43 179.5 258 51.9
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 4.2e-43 179.1 248 51.2
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 5.5e-43 178.7 254 53.1
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 7.2e-43 178.3 257 50.2
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 2.1e-42 176.8 253 53.4
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 2.1e-42 176.8 256 51.2
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 3.6e-42 176.0 254 56.7
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 3.6e-42 176.0 266 52.6
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 4.6e-42 175.6 252 51.6
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 7.9e-42 174.9 256 50.8
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 7.9e-42 174.9 260 52.7
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.4e-41 174.1 254 52.8
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 1.8e-41 173.7 256 52.7
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 1.8e-41 173.7 255 52.9
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.8e-41 173.7 263 44.9
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 2.3e-41 173.3 181 55.8
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 3.9e-41 172.6 262 51.9
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 5.1e-41 172.2 247 50.6
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 5.1e-41 172.2 257 52.5
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 1.1e-40 171.0 258 50.8
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.1e-40 171.0 257 50.6
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.0e-40 170.2 258 51.2
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.6e-40 169.9 254 51.6
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 2.6e-40 169.9 259 49.0
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.6e-40 169.9 256 50.0
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 3.3e-40 169.5 253 54.5
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 5.7e-40 168.7 256 50.4
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 5.7e-40 168.7 255 52.2
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 1.3e-39 167.5 255 51.8
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 1.3e-39 167.5 259 46.7
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 1.7e-39 167.2 253 50.6
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 2.2e-39 166.8 262 48.5
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 3.7e-39 166.0 260 51.2
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 3.7e-39 166.0 260 51.2
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 3.7e-39 166.0 257 49.4
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 4.8e-39 165.6 259 51.7
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 8.2e-39 164.9 259 52.9
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 1.1e-38 164.5 256 51.6
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.1e-38 164.5 260 51.5
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.1e-38 164.5 257 49.0
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 2.4e-38 163.3 249 51.0
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 6.9e-38 161.8 257 48.2
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 1.5e-37 160.6 259 49.4
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 2.0e-37 160.2 247 50.6
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 3.4e-37 159.5 251 51.4
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 4.5e-37 159.1 261 48.3
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 5.9e-37 158.7 264 49.6
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 7.7e-37 158.3 260 47.7
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 7.7e-37 158.3 253 50.2
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 7.7e-37 158.3 254 50.4
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.3e-36 157.5 257 54.5
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 1.3e-36 157.5 257 52.9
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 2.2e-36 156.8 261 52.1
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 2.9e-36 156.4 262 47.7
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 2.9e-36 156.4 263 44.5
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 3.8e-36 156.0 255 47.5
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 3.8e-36 156.0 259 47.9
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 5.0e-36 155.6 262 48.1
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 6.5e-36 155.2 254 50.8
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 8.5e-36 154.8 259 47.9
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 1.1e-35 154.5 267 50.9
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.1e-35 154.5 268 46.3
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 1.1e-35 154.5 256 46.9
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 1.4e-35 154.1 260 49.6
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 2.5e-35 153.3 257 51.4
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 2.5e-35 153.3 261 51.0
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.5e-35 153.3 261 53.3
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 3.2e-35 152.9 262 47.3
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 4.2e-35 152.5 261 51.3
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 4.2e-35 152.5 256 46.5
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 7.2e-35 151.8 256 47.7
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 7.2e-35 151.8 268 45.9
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 9.4e-35 151.4 272 43.4
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 2.1e-34 150.2 260 45.4
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 2.1e-34 150.2 256 46.9
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 3.6e-34 149.4 254 46.9
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 3.6e-34 149.4 254 46.9
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 7.9e-34 148.3 264 47.3
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 7.9e-34 148.3 262 47.3
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 7.9e-34 148.3 285 49.1
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 1.0e-33 147.9 262 47.3
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 1.8e-33 147.1 267 50.2
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 1.8e-33 147.1 262 46.2
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.8e-33 147.1 255 49.8
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 2.3e-33 146.7 260 46.5
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 3.9e-33 146.0 262 46.9
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 6.7e-33 145.2 263 46.4
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 8.8e-33 144.8 258 44.2
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.1e-32 144.4 273 45.1
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 2.0e-32 143.7 240 50.4
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 9.7e-32 141.4 259 46.3
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 9.7e-32 141.4 254 49.2
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 1.7e-31 140.6 261 45.2
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 2.2e-31 140.2 243 53.9
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 4.8e-31 139.0 255 47.8
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 1.8e-30 137.1 196 52.6
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 1.6e-29 134.0 258 43.8
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 3.5e-29 132.9 135 57.8
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 3.5e-29 132.9 250 43.6
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 5.0e-28 129.0 258 48.4
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 3.2e-27 126.3 204 50.0
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 7.2e-27 125.2 193 49.2
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 1.8e-25 120.6 270 40.4
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 2.3e-25 120.2 196 48.0
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 2.3e-25 120.2 251 49.4
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 5.2e-25 119.0 256 47.7
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 3.3e-24 116.3 271 46.5
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 8.2e-23 111.7 123 51.2
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 2.4e-22 110.2 180 49.4
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 4.5e-21 105.9 256 48.0
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 5.0e-20 102.4 170 43.5
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.5e-19 100.1 102 53.9
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 2.5e-19 100.1 243 37.4
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 9.4e-19 98.2 100 54.0
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 1.2e-18 97.8 170 42.4
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 2.1e-18 97.1 164 42.7
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 2.7e-18 96.7 268 40.7
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 1.0e-17 94.7 116 47.4
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 3.1e-14 83.2 155 36.8
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 4.1e-14 82.8 203 38.4
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 9.1e-14 81.6 68 60.3
Psat3g198120 Pisum sativum HOM05D003369 ORTHO05D004089 7.7e-13 78.6 101 48.5
Lsat_1_v5_gn_4_53561 Lactuca sativa HOM05D003369 ORTHO05D004089 1.9e-11 73.9 178 36.0
Nitab4.5_0003473g0020 Nicotiana tabacum HOM05D003369 ORTHO05D004089 7.5e-08 62.0 37 86.5
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 1.3e-07 61.2 192 30.2
Lj8C53G16 Lonicera japonica HOM05D003369 ORTHO05D004089 6.3e-07 58.9 35 82.9


User provided reference genes

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