Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.4e-148 529.6 270 100.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 7.8e-136 487.3 274 92.3
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.3e-127 459.9 263 90.9
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.3e-97 357.5 269 73.2
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.2e-93 344.4 270 69.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.5e-91 338.6 233 74.2
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 6.8e-39 165.2 272 39.7
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.6e-32 144.1 285 36.1
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.4e-31 141.0 249 37.8
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 6.8e-31 138.7 196 43.9
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.2e-30 137.9 205 42.0
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.4e-30 136.0 208 41.8
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 5.8e-30 135.6 205 42.0
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.8e-30 135.6 202 41.6
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.3e-29 134.4 229 39.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 6.4e-29 132.1 279 36.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 2.4e-28 130.2 244 36.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 5.4e-28 129.0 244 37.7
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 7.0e-28 128.6 245 35.5
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 9.2e-28 128.3 193 43.0
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-27 127.9 267 35.6
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.6e-27 127.5 205 41.0
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 7.8e-27 125.2 270 33.3
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.0e-26 124.8 202 36.1
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.3e-26 124.4 195 41.0
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.3e-26 123.6 195 41.0
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.3e-26 123.6 294 35.0
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.0e-26 123.2 202 35.6
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.0e-26 123.2 202 35.6
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 8.6e-26 121.7 204 38.7
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.1e-25 121.3 234 35.0
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.1e-25 121.3 213 39.0
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.1e-25 121.3 208 37.5
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.1e-25 121.3 169 42.6
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.1e-25 121.3 176 42.6
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.1e-25 121.3 173 43.4
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.6e-25 119.0 215 35.8
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.2e-24 117.9 250 35.2
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.2e-24 117.9 203 37.9
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.2e-24 117.9 203 37.9
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.2e-24 117.9 212 39.2
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.6e-24 117.5 193 38.3
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.6e-24 117.5 212 39.6
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.1e-24 117.1 211 38.4
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 4.7e-24 115.9 187 40.1
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 4.7e-24 115.9 213 39.4
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 6.2e-24 115.5 171 41.5
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 6.2e-24 115.5 212 38.2
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.1e-24 115.2 203 38.9
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.4e-23 114.4 195 34.9
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.8e-23 114.0 203 39.4
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 2.3e-23 113.6 206 39.8
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.3e-23 113.6 228 41.7
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.3e-23 113.6 210 38.6
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.1e-23 113.2 209 36.4
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 5.2e-23 112.5 246 34.6
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 5.2e-23 112.5 222 36.5
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 5.2e-23 112.5 245 34.3
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 5.2e-23 112.5 178 41.6
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 8.9e-23 111.7 224 35.3
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.5e-22 110.9 224 36.2
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.5e-22 110.9 203 34.0
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 2.6e-22 110.2 206 36.9
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 2.6e-22 110.2 190 39.5
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.4e-22 109.8 187 38.0
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.3e-21 107.8 194 33.5
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.2e-21 107.1 171 37.4
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.7e-21 106.3 201 36.3
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.4e-20 104.4 290 33.1
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.9e-20 104.0 203 37.4
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.2e-20 103.2 203 36.9
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.2e-20 103.2 203 36.9
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.2e-20 103.2 203 36.9
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.1e-20 102.8 203 36.9
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 5.4e-20 102.4 171 39.8
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 1.2e-19 101.3 226 33.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 2.1e-19 100.5 204 35.8
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 2.7e-19 100.1 217 37.8
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 3.5e-19 99.8 208 31.7
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 4.6e-19 99.4 202 36.1
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.6e-19 99.4 177 39.0
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 4.6e-19 99.4 205 37.1
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 6.0e-19 99.0 211 33.6
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 6.0e-19 99.0 177 40.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.0e-18 98.2 171 40.9
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.0e-18 98.2 237 36.3
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.3e-18 97.8 213 32.9
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.7e-18 97.4 206 33.5
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.3e-18 97.1 206 31.6
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 3.0e-18 96.7 204 34.8
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 3.9e-18 96.3 223 35.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.9e-18 96.3 202 35.1
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 3.9e-18 96.3 201 34.3
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 5.1e-18 95.9 185 34.6
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 5.1e-18 95.9 202 35.6
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 6.6e-18 95.5 234 32.9
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.6e-18 95.1 175 38.9
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.1e-17 94.7 192 37.5
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 1.5e-17 94.4 236 33.9
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.5e-17 94.4 203 35.5
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.9e-17 94.0 210 38.6
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 3.3e-17 93.2 208 35.1
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 4.3e-17 92.8 203 31.0
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.3e-17 92.8 253 33.2
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.3e-17 92.8 207 32.9
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 5.6e-17 92.4 259 34.0
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.6e-17 92.4 168 33.9
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 7.3e-17 92.0 210 35.7
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 9.5e-17 91.7 175 37.1
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 3.6e-16 89.7 145 41.4
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.7e-16 89.4 241 32.4
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.2e-16 89.0 268 31.7
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 8.1e-16 88.6 192 30.7
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.1e-15 88.2 207 31.4
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-15 88.2 192 30.2
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.1e-15 88.2 198 33.3
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.4e-15 87.8 202 33.7
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.4e-15 87.8 209 35.4
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.4e-15 87.8 251 31.1
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.8e-15 87.4 218 30.7
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 3.1e-15 86.7 246 31.3
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.2e-14 84.7 170 31.8
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.2e-14 84.7 204 31.4
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.2e-14 84.7 109 48.6
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 2.6e-14 83.6 209 34.9
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 9.9e-14 81.6 167 35.9
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.3e-13 81.3 142 39.4
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 2.9e-13 80.1 249 28.9
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 2.9e-13 80.1 160 33.8
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 4.9e-13 79.3 205 32.7
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 6.4e-13 79.0 141 34.0
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.9e-12 77.4 224 29.9
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.2e-12 76.6 206 33.5
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 4.1e-12 76.3 230 29.6
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 5.4e-12 75.9 212 34.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 7.1e-12 75.5 126 42.1
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 9.2e-12 75.1 260 29.2
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 2.1e-11 73.9 175 33.1
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 4.6e-11 72.8 237 29.1
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 1.0e-10 71.6 237 27.8
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 8.6e-10 68.6 200 28.0
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.5e-09 67.8 150 38.0
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.9e-09 67.4 192 26.6
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 4.3e-09 66.2 133 33.1
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 4.0e-07 59.7 140 35.0
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 8.9e-07 58.5 81 51.9
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 4.4e-06 56.2 93 41.9
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 4.4e-06 56.2 104 41.3


User provided reference genes

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