Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.8e-170 602.4 299 100.0
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 3.3e-159 565.1 296 95.3
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 8.9e-141 503.8 300 85.7
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 4.9e-139 498.0 305 83.6
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 8.3e-139 497.3 304 83.9
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 2.1e-134 482.6 247 98.4
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 3.3e-119 432.2 242 88.4
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 3.9e-112 408.7 262 76.0
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 8.7e-112 407.5 262 75.6
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 4.3e-111 405.2 251 78.9
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.1e-110 402.9 265 72.8
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 2.8e-110 402.5 265 75.5
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 4.8e-110 401.7 267 73.0
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.0e-108 396.4 260 74.2
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 3.8e-107 392.1 271 71.2
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 8.4e-107 391.0 273 70.7
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 4.2e-106 388.7 265 71.7
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.7e-105 386.0 265 71.7
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 2.7e-105 386.0 264 72.3
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 3.9e-104 382.1 271 70.5
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 8.7e-104 380.9 264 69.7
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.5e-103 380.2 261 70.9
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 1.3e-102 377.1 296 65.2
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 4.0e-101 372.1 266 68.4
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 4.0e-101 372.1 267 67.4
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 6.9e-101 371.3 300 63.0
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 1.2e-100 370.5 264 67.4
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.5e-100 370.2 263 67.7
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.0e-100 369.8 287 64.1
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 2.6e-100 369.4 287 64.1
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 5.8e-100 368.2 293 63.5
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 5.8e-100 368.2 268 66.0
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 7.6e-100 367.9 298 61.1
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.3e-99 367.1 269 68.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.7e-99 366.7 300 62.3
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 2.9e-99 365.9 300 62.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 3.8e-99 365.5 261 67.8
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 6.5e-99 364.8 249 70.7
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 1.1e-98 364.0 259 68.0
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.9e-98 363.2 294 63.3
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.9e-98 363.2 260 67.7
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.2e-98 362.1 288 62.8
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 5.5e-98 361.7 267 69.3
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 2.7e-97 359.4 261 65.1
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 2.3e-96 356.3 257 66.1
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 2.3e-96 356.3 246 71.5
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 2.3e-96 356.3 255 67.1
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 3.0e-96 355.9 270 65.9
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 6.7e-96 354.8 319 57.4
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.9e-95 353.2 262 66.0
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 2.5e-95 352.8 261 67.0
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.3e-94 350.5 264 65.5
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 2.2e-94 349.7 256 65.6
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 2.8e-94 349.4 256 64.8
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 4.8e-94 348.6 257 65.0
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 6.3e-94 348.2 283 63.3
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.4e-93 347.1 240 70.8
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.8e-93 346.7 245 70.6
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 4.1e-93 345.5 257 65.4
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 3.4e-92 342.4 319 55.5
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 5.9e-92 341.7 275 61.8
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.0e-91 340.9 255 63.1
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.1e-90 337.4 267 62.2
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.9e-90 336.7 268 64.6
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 7.2e-90 334.7 261 64.8
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 4.6e-89 332.0 235 68.1
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 1.4e-88 330.5 299 57.5
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 1.4e-88 330.5 267 63.3
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 6.7e-88 328.2 313 54.3
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.1e-87 327.4 257 61.9
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.5e-87 327.0 251 64.9
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 5.7e-87 325.1 261 61.7
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.3e-86 323.9 262 61.8
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 2.4e-85 319.7 270 59.6
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 2.4e-85 319.7 270 59.6
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.4e-85 319.7 267 58.1
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 5.3e-85 318.5 261 60.5
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.5e-84 317.0 270 59.6
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 2.9e-83 312.8 269 60.2
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.0e-83 312.0 266 61.3
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 1.4e-82 310.5 270 57.8
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 2.5e-82 309.7 290 55.5
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 2.5e-82 309.7 290 55.5
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 2.1e-81 306.6 265 60.0
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 6.1e-81 305.1 264 58.3
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.9e-74 283.5 263 55.5
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.6e-73 280.4 263 55.1
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 6.1e-73 278.5 266 55.6
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 5.3e-69 265.4 194 64.9
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 9.1e-69 264.6 215 62.3
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.0e-67 261.2 254 51.6
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.0e-67 261.2 213 60.6
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.3e-67 260.8 170 72.9
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 1.2e-63 247.7 301 45.5
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 3.1e-61 239.6 204 61.3
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 5.9e-60 235.3 209 61.7
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.6e-57 227.3 181 60.2
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 2.6e-55 219.9 202 55.0
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.2e-52 211.1 158 62.0
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 2.0e-52 210.3 153 66.7
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 7.7e-52 208.4 252 41.3
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.0e-39 167.2 132 59.1
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 9.8e-39 164.9 144 58.3
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.5e-34 151.0 146 52.7
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.9e-21 107.5 188 34.6
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 2.3e-19 100.5 250 30.4
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 3.6e-17 93.2 279 30.5
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 3.8e-14 83.2 54 66.7
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.7e-12 77.0 209 28.7
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 6.0e-12 75.9 56 58.9
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 3.9e-11 73.2 56 58.9
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 9.6e-10 68.6 304 25.3
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 2.1e-09 67.4 239 25.1
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 4.8e-09 66.2 303 23.4
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 8.1e-09 65.5 251 23.9
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 1.1e-08 65.1 273 23.8
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 1.1e-08 65.1 243 26.3
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 1.4e-08 64.7 239 25.1
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 1.4e-08 64.7 239 25.1
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 1.8e-08 64.3 267 24.0
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 2.4e-08 63.9 251 23.9
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 3.1e-08 63.5 245 24.9
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 4.0e-08 63.2 263 24.3
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 5.3e-08 62.8 263 23.2
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 5.3e-08 62.8 239 24.7
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 5.3e-08 62.8 245 24.5
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 6.9e-08 62.4 292 23.3
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 6.9e-08 62.4 243 25.5
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 6.9e-08 62.4 243 25.5
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 6.9e-08 62.4 239 23.8
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 9.0e-08 62.0 259 25.1
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 9.0e-08 62.0 239 25.1
FAN21G0719 Fragaria x ananassa HOM05D006655 ORTHO05D007986 9.0e-08 62.0 239 24.7
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 9.0e-08 62.0 245 24.1
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 9.0e-08 62.0 245 24.1
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 1.2e-07 61.6 260 23.5
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 1.2e-07 61.6 262 24.4
HPP92_025004 Vanilla planifolia HOM05D006655 ORTHO05D007986 1.2e-07 61.6 316 22.5
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 1.5e-07 61.2 256 23.4
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 1.5e-07 61.2 256 23.4
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 1.5e-07 61.2 239 24.7
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 1.5e-07 61.2 241 23.7
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 2.0e-07 60.8 258 24.0
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 2.6e-07 60.5 239 24.7
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 2.6e-07 60.5 239 23.8
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 3.4e-07 60.1 256 24.2
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 3.4e-07 60.1 239 23.8
Duzib170G0104 Durio zibethinus HOM05D006655 ORTHO05D007986 4.4e-07 59.7 242 24.4
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 4.4e-07 59.7 248 23.4
Sabra16G0154600 Salix brachista HOM05D006655 ORTHO05D007986 4.4e-07 59.7 224 25.0
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 4.4e-07 59.7 239 23.0
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 5.8e-07 59.3 263 22.8
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 5.8e-07 59.3 263 23.6
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 5.8e-07 59.3 259 22.4
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 5.8e-07 59.3 294 23.1
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 7.6e-07 58.9 263 23.2
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 9.9e-07 58.5 240 25.0
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 9.9e-07 58.5 262 24.4
CsaV3_1G043150 Cucumis sativus L. HOM05D006655 ORTHO05D007986 9.9e-07 58.5 263 23.2
PSO339G6694 Papaver somniferum HOM05D006655 ORTHO05D007986 9.9e-07 58.5 255 23.9
Atru.chr3.2616 Acer truncatum HOM05D006655 ORTHO05D007986 1.3e-06 58.2 234 23.5
Pp3c15_7750 Physcomitrium patens HOM05D005785 ORTHO05D007017 1.3e-06 58.2 240 23.8
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.7e-06 57.8 45 51.1
PSO384G1723 Papaver somniferum HOM05D006655 ORTHO05D007986 2.2e-06 57.4 255 23.5
VMungo0331G0819 Vigna mungo HOM05D006655 ORTHO05D007986 2.9e-06 57.0 272 22.8
A03p60830 Brassica napus HOM05D006655 ORTHO05D007986 3.8e-06 56.6 237 22.8
Gohir.A09G111300 Gossypium hirsutum HOM05D006655 ORTHO05D007986 3.8e-06 56.6 240 23.8
Phvul.010G032900 Phaseolus vulgaris HOM05D006655 ORTHO05D007986 3.8e-06 56.6 266 23.7
Medtr8g010700 Medicago truncatula HOM05D006655 ORTHO05D007986 4.9e-06 56.2 255 24.3
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 6.4e-06 55.8 243 23.5
Glyma.16G082200 Glycine max HOM05D006655 ORTHO05D007986 6.4e-06 55.8 266 23.7
Solyc01g008920.4 Solanum lycopersicum HOM05D006655 ORTHO05D007986 6.4e-06 55.8 239 23.8
Sopen01g004410 Solanum pennellii HOM05D006655 ORTHO05D007986 6.4e-06 55.8 239 23.8
SGA_v2.0_scaffold8G04557 Striga asiatica HOM05D006655 ORTHO05D007986 6.4e-06 55.8 236 24.2
Nn2g14958 Nelumbo nucifera HOM05D006655 ORTHO05D007986 8.4e-06 55.5 239 24.3


User provided reference genes

Program Settings