Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 8.0e-79 297.0 144 100.0
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 5.2e-78 294.3 144 99.3
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 5.2e-78 294.3 144 99.3
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 3.3e-77 291.6 144 97.9
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 3.3e-77 291.6 144 97.9
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 4.4e-77 291.2 144 97.9
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 91.0
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 90.3
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 2.1e-71 272.3 144 89.6
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 90.3
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 89.6
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 89.6
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 88.2
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 3.0e-70 268.5 143 88.8
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 5.2e-70 267.7 144 88.9
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 6.8e-70 267.3 144 88.9
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 8.8e-70 266.9 144 88.9
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.2e-69 266.5 151 87.4
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.2e-69 266.5 151 87.4
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 1.5e-69 266.2 144 88.2
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 88.2
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 87.5
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 3.4e-69 265.0 144 87.5
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 5.7e-69 264.2 144 87.5
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 5.7e-69 264.2 144 87.5
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 5.7e-69 264.2 144 87.5
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 5.7e-69 264.2 144 86.8
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 7.5e-69 263.8 144 87.5
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 9.8e-69 263.5 144 86.1
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 9.8e-69 263.5 144 87.5
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 86.1
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 86.1
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 86.8
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 85.4
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.1
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.7e-68 262.7 144 86.8
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.7e-68 262.7 142 87.3
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 2.2e-68 262.3 144 86.8
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 2.8e-68 261.9 144 86.8
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.8e-68 261.9 144 86.8
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 3.7e-68 261.5 144 86.1
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 3.7e-68 261.5 144 86.1
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 3.7e-68 261.5 144 84.7
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 4.8e-68 261.2 144 86.1
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 4.8e-68 261.2 144 86.1
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 4.8e-68 261.2 144 86.1
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 4.8e-68 261.2 141 87.9
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 4.8e-68 261.2 144 85.4
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.8
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 85.4
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 86.1
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 86.1
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 1.1e-67 260.0 144 84.7
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.4e-67 259.6 144 84.7
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 1.4e-67 259.6 144 85.4
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.4e-67 259.6 144 85.4
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.4e-67 259.6 144 84.7
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.8e-67 259.2 142 87.3
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.8e-67 259.2 144 85.4
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 2.4e-67 258.8 144 85.4
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 2.4e-67 258.8 144 84.7
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 3.1e-67 258.5 144 84.7
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.1e-67 258.5 144 84.0
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 3.1e-67 258.5 144 85.4
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.1e-67 258.1 144 84.0
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 4.1e-67 258.1 154 83.1
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 5.4e-67 257.7 144 84.7
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 5.4e-67 257.7 144 84.0
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 7.0e-67 257.3 144 84.0
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 7.0e-67 257.3 144 84.7
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 7.0e-67 257.3 142 85.2
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 7.0e-67 257.3 144 84.7
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 9.1e-67 256.9 144 84.0
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 85.4
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 82.6
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 84.0
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 84.0
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 83.3
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.0e-66 255.8 144 82.6
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.0e-66 255.8 144 84.0
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.7e-66 255.4 144 83.3
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 2.7e-66 255.4 144 83.3
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.7e-66 255.4 144 83.3
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.7e-66 255.4 144 83.3
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.7e-66 255.4 144 83.3
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 2.7e-66 255.4 144 84.0
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 3.5e-66 255.0 144 86.8
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 3.5e-66 255.0 144 83.3
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 4.5e-66 254.6 144 84.0
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 7.7e-66 253.8 144 83.3
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 7.7e-66 253.8 144 83.3
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.0e-65 253.4 144 83.3
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 1.0e-65 253.4 144 82.6
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 1.3e-65 253.1 144 82.6
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 2.9e-65 251.9 175 73.7
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 2.9e-65 251.9 144 82.6
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 2.9e-65 251.9 144 82.6
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 3.3e-64 248.4 144 80.6
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 6.1e-63 244.2 135 85.9
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.0e-62 243.4 135 86.7
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 6.8e-62 240.7 143 78.3
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 2.0e-58 229.2 139 79.1
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 3.5e-58 228.4 144 78.5
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 2.3e-57 225.7 144 72.2
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 4.7e-55 218.0 177 64.4
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 4.4e-53 211.5 144 72.2
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.7e-52 209.5 260 46.9
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 9.2e-51 203.8 140 74.3
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 3.9e-49 198.4 144 64.6
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 1.1e-48 196.8 117 82.9
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 3.3e-48 195.3 308 40.6
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.6e-47 193.0 141 63.8
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.4e-46 189.9 141 64.5
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.5e-45 186.4 142 62.0
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 2.6e-45 185.7 138 63.8
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 2.9e-44 182.2 142 65.5
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.7e-36 156.4 84 86.9
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 6.4e-36 154.5 82 89.0
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 1.9e-35 152.9 93 77.4
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 5.4e-35 151.4 73 98.6
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 1.7e-33 146.4 142 50.7
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 3.0e-33 145.6 73 93.2
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 1.1e-32 143.7 71 93.0
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 4.3e-32 141.7 89 74.2
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-31 138.7 73 86.3
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 3.6e-31 138.7 73 86.3
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.4e-27 126.7 143 46.2
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 2.1e-26 122.9 133 45.1
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 3.0e-25 119.0 66 84.8
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 8.7e-25 117.5 133 48.1
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.5e-24 116.7 156 46.8
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 5.6e-24 114.8 63 84.1
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 1.2e-23 113.6 66 80.3
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 3.1e-22 109.0 74 71.6
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 4.8e-15 85.1 46 89.1
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 2.4e-14 82.8 92 50.0
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 1.6e-10 70.1 99 38.4
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 4.6e-10 68.6 54 64.8
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.1e-07 59.7 30 80.0
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 6.9e-06 54.7 95 41.1


User provided reference genes

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