Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011568 Solanum tuberosum HOM05D004599 ORTHO05D005564 1.0e-162 576.6 286 100.0
Sopen09g034030 Solanum pennellii HOM05D004599 ORTHO05D005564 8.2e-144 513.8 286 91.3
Solyc09g091050.4 Solanum lycopersicum HOM05D004599 ORTHO05D005564 1.4e-143 513.1 286 91.3
CAN.G812.39 Capsicum annuum HOM05D004599 ORTHO05D005564 7.7e-142 507.3 282 91.1
Nitab4.5_0000451g0060 Nicotiana tabacum HOM05D004599 ORTHO05D005564 1.2e-137 493.4 286 87.1
Nitab4.5_0000867g0040 Nicotiana tabacum HOM05D004599 ORTHO05D005564 2.0e-134 482.6 295 84.4
PGSC0003DMG403001548 Solanum tuberosum HOM05D004599 ORTHO05D005564 7.5e-129 464.2 246 95.5
Dinv27138 Davidia involucrata HOM05D004599 ORTHO05D005564 9.2e-103 377.5 282 67.7
Peaxi162Scf00125g01026 Petunia axillaris HOM05D004599 ORTHO05D005564 2.7e-102 375.9 225 85.3
Actinidia35930 Actinidia chinensis HOM05D004599 ORTHO05D005564 6.2e-99 364.8 279 67.4
CSS0038132 Camellia sinensis var. sinensis HOM05D004599 ORTHO05D005564 5.2e-98 361.7 274 66.8
TAR365G0001 Trochodendron aralioides HOM05D004599 ORTHO05D005564 3.4e-97 359.0 303 62.7
Rhsim09G0044400 Rhododendron simsii HOM05D004599 ORTHO05D005564 1.1e-95 354.0 288 63.5
Hma1.2p1_1076F.1_g254550 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 3.5e-94 349.0 268 66.8
Gohir.A02G025500 Gossypium hirsutum HOM05D004599 ORTHO05D005564 1.7e-93 346.7 286 63.6
vmacro00526 Vaccinium macrocarpon HOM05D004599 ORTHO05D005564 3.9e-93 345.5 259 66.0
Duzib212G0332 Durio zibethinus HOM05D004599 ORTHO05D005564 1.2e-91 340.5 260 65.4
Gohir.D02G032700 Gossypium hirsutum HOM05D004599 ORTHO05D005564 2.8e-91 339.3 286 62.9
Gorai.005G036200 Gossypium raimondii HOM05D004599 ORTHO05D005564 2.8e-91 339.3 286 62.6
Ciclev10004289m.g Citrus clementina HOM05D004599 ORTHO05D005564 3.6e-91 339.0 275 64.0
Thecc.04G218800 Theobroma cacao HOM05D004599 ORTHO05D005564 4.7e-91 338.6 296 58.4
Nn1g03051 Nelumbo nucifera HOM05D004599 ORTHO05D005564 8.1e-91 337.8 296 59.1
COL.COLO4_07140 Corchorus olitorius HOM05D004599 ORTHO05D005564 1.1e-90 337.4 296 58.8
Oeu008817.2 Olea europaea HOM05D004599 ORTHO05D005564 6.8e-90 334.7 283 61.1
Cc03_g06960 Coffea canephora HOM05D004599 ORTHO05D005564 1.2e-89 334.0 284 61.6
ECA233G3541 Erigeron canadensis HOM05D004599 ORTHO05D005564 1.2e-89 334.0 280 63.9
CiPaw.01G175100 Carya illinoinensis HOM05D004599 ORTHO05D005564 2.0e-89 333.2 284 60.2
Duzib151G0579 Durio zibethinus HOM05D004599 ORTHO05D005564 1.7e-88 330.1 290 58.3
Cfa014829 Carpinus fangiana HOM05D004599 ORTHO05D005564 2.2e-88 329.7 286 60.5
Prupe.1G054000 Prunus persica HOM05D004599 ORTHO05D005564 2.2e-88 329.7 275 60.0
PGR004G1602 Punica granatum HOM05D004599 ORTHO05D005564 2.2e-88 329.7 274 62.4
CANSAT78G2223 Cannabis sativa HOM05D004599 ORTHO05D005564 2.4e-87 326.2 279 59.5
TWI09G0954 Tripterygium wilfordii HOM05D004599 ORTHO05D005564 9.3e-87 324.3 273 60.8
Lj3A633T10 Lonicera japonica HOM05D004599 ORTHO05D005564 1.2e-86 323.9 258 64.7
SGA_v2.0_scaffold155G37242 Striga asiatica HOM05D004599 ORTHO05D005564 2.1e-86 323.2 297 58.2
HanXRQChr07g0185811 Helianthus annuus HOM05D004599 ORTHO05D005564 3.5e-86 322.4 266 65.0
Manes.03G155700 Manihot esculenta HOM05D004599 ORTHO05D005564 7.8e-86 321.2 271 61.3
Hund19266 Selenicereus undatus HOM05D004599 ORTHO05D005564 3.0e-85 319.3 272 61.4
ClCG11G000260 Citrullus lanatus HOM05D004599 ORTHO05D005564 6.6e-85 318.2 270 60.7
MD13G1226600 Malus domestica HOM05D004599 ORTHO05D005564 1.5e-84 317.0 277 57.4
Sed0004443 Sechium edule HOM05D004599 ORTHO05D005564 1.3e-83 313.9 273 58.2
CsaV3_5G015660 Cucumis sativus L. HOM05D004599 ORTHO05D005564 2.8e-83 312.8 266 59.4
MELO3C022936.2 Cucumis melo HOM05D004599 ORTHO05D005564 4.8e-83 312.0 266 59.8
Migut.O00257 Erythranthe guttata HOM05D004599 ORTHO05D005564 4.8e-83 312.0 278 59.7
Potri.010G062700 Populus trichocarpa HOM05D004599 ORTHO05D005564 6.2e-83 311.6 268 59.7
Sabra10G0044000 Salix brachista HOM05D004599 ORTHO05D005564 6.2e-83 311.6 273 58.6
Ca_26211_v3 Cicer arietinum L. HOM05D004599 ORTHO05D005564 8.1e-83 311.2 280 56.4
FAN17G0126 Fragaria x ananassa HOM05D004599 ORTHO05D005564 2.4e-82 309.7 272 60.3
FAN07G1323 Fragaria x ananassa HOM05D004599 ORTHO05D005564 9.0e-82 307.8 273 59.0
Glyma.20G081500 Glycine max HOM05D004599 ORTHO05D005564 9.0e-82 307.8 278 57.2
RcHm_v2.0_Chr4g0396161 Rosa chinensis HOM05D004599 ORTHO05D005564 9.0e-82 307.8 275 57.5
Sc19g0005730 Simmondsia chinensis HOM05D004599 ORTHO05D005564 1.2e-81 307.4 278 57.6
FvH4_4g05250 Fragaria vesca HOM05D004599 ORTHO05D005564 3.4e-81 305.8 272 59.2
FAN12G1799 Fragaria x ananassa HOM05D004599 ORTHO05D005564 3.4e-81 305.8 272 59.2
Glyma.10G130800 Glycine max HOM05D004599 ORTHO05D005564 3.4e-81 305.8 278 56.8
VMungo0720G2025 Vigna mungo HOM05D004599 ORTHO05D005564 9.9e-81 304.3 277 57.0
AUR62035896 Chenopodium quinoa HOM05D004599 ORTHO05D005564 1.7e-80 303.5 269 56.1
Oeu007539.1 Olea europaea HOM05D004599 ORTHO05D005564 2.2e-80 303.1 284 58.1
Medtr1g045930 Medicago truncatula HOM05D004599 ORTHO05D005564 4.9e-80 302.0 274 56.9
Cpa.g.sc59.43 Carica papaya HOM05D004599 ORTHO05D005564 1.9e-79 300.1 327 52.9
Phvul.007G232800 Phaseolus vulgaris HOM05D004599 ORTHO05D005564 1.9e-79 300.1 277 56.3
AUR62035344 Chenopodium quinoa HOM05D004599 ORTHO05D005564 3.2e-79 299.3 267 55.1
Psat0s3917g0040 Pisum sativum HOM05D004599 ORTHO05D005564 4.2e-79 298.9 280 54.3
TPR.G23991 Trifolium pratense HOM05D004599 ORTHO05D005564 7.1e-79 298.1 278 55.0
SalBow2G1411 Salvia bowleyana HOM05D004599 ORTHO05D005564 1.2e-78 297.4 287 57.1
Atru.chr4.1870 Acer truncatum HOM05D004599 ORTHO05D005564 2.1e-78 296.6 239 66.1
Aqoxy5G00088 Aquilegia oxysepala HOM05D004599 ORTHO05D005564 4.6e-78 295.4 282 55.7
Lj6g0015914 Lotus japonicus HOM05D004599 ORTHO05D005564 6.0e-78 295.0 291 54.0
AL7G43140 Arabidopsis lyrata HOM05D004599 ORTHO05D005564 7.9e-78 294.7 274 55.5
PSO832G1760 Papaver somniferum HOM05D004599 ORTHO05D005564 2.3e-77 293.1 292 51.7
Psat0s2340g0040 Pisum sativum HOM05D004599 ORTHO05D005564 3.0e-77 292.7 280 51.4
Aa31LG9G4110 Aethionema arabicum HOM05D004599 ORTHO05D005564 8.7e-77 291.2 289 54.3
Sp7g11150 Schrenkiella parvula HOM05D004599 ORTHO05D005564 2.5e-76 289.7 296 52.7
EL10Ac3g06729 Beta vulgaris HOM05D004599 ORTHO05D005564 4.3e-76 288.9 281 52.7
Haze_11507 Corylus avellana HOM05D004599 ORTHO05D005564 4.3e-76 288.9 262 58.8
Lalb_Chr03g0036871 Lupinus albus HOM05D004599 ORTHO05D005564 4.3e-76 288.9 282 51.8
AT4G13550 Arabidopsis thaliana HOM05D004599 ORTHO05D005564 5.6e-76 288.5 275 54.5
DCAR_024304 Daucus carota HOM05D004599 ORTHO05D005564 9.6e-76 287.7 299 52.5
BcaC02g09417 Brassica carinata HOM05D004599 ORTHO05D005564 1.6e-75 287.0 272 55.9
C04p42390 Brassica napus HOM05D004599 ORTHO05D005564 1.6e-75 287.0 272 55.9
A04p08630 Brassica napus HOM05D004599 ORTHO05D005564 2.1e-75 286.6 276 55.8
BraA04t16557Z Brassica rapa HOM05D004599 ORTHO05D005564 2.1e-75 286.6 276 55.8
Carub.0007s2899 Capsella rubella HOM05D004599 ORTHO05D005564 2.1e-75 286.6 293 52.9
Ah.13g074990 Amaranthus hybridus HOM05D004599 ORTHO05D005564 4.8e-75 285.4 341 45.5
Thhalv10024569m.g Eutrema salsugineum HOM05D004599 ORTHO05D005564 6.2e-75 285.0 272 54.4
BcaB03g16085 Brassica carinata HOM05D004599 ORTHO05D005564 8.1e-75 284.6 277 54.9
BolC4t25820H Brassica oleracea HOM05D004599 ORTHO05D005564 1.5e-73 280.4 278 54.7
ATR0088G024 Amborella trichopoda HOM05D004599 ORTHO05D005564 7.6e-73 278.1 295 50.8
FAN22G0163 Fragaria x ananassa HOM05D004599 ORTHO05D005564 8.4e-72 274.6 247 59.9
Lsat_1_v5_gn_6_67861 Lactuca sativa HOM05D004599 ORTHO05D005564 1.3e-64 250.8 230 58.3
Eucgr.H03725 Eucalyptus grandis HOM05D004599 ORTHO05D005564 6.5e-64 248.4 246 55.3
Eucgr.D02003 Eucalyptus grandis HOM05D004599 ORTHO05D005564 1.1e-63 247.7 208 62.0
Os04g0509100 Oryza sativa ssp. japonica HOM05D004599 ORTHO05D005564 1.1e-63 247.7 304 47.0
Zm00001eb426320 Zea mays HOM05D004599 ORTHO05D005564 2.5e-63 246.5 293 45.4
HPP92_012645 Vanilla planifolia HOM05D004599 ORTHO05D005564 7.1e-63 245.0 265 49.8
arahy.Tifrunner.gnm1.ann1.7X6UW5 Arachis hypogaea HOM05D004599 ORTHO05D005564 3.3e-60 236.1 261 48.3
CARHR219180 Cardamine hirsuta HOM05D004599 ORTHO05D005564 3.1e-58 229.6 242 52.9
Sed0019442 Sechium edule HOM05D004599 ORTHO05D005564 8.2e-51 204.9 250 44.8
MBI07_g14440_MAGBIO Magnolia biondii HOM05D004599 ORTHO05D005564 1.5e-49 200.7 275 45.5
Eucgr.L03504 Eucalyptus grandis HOM05D004599 ORTHO05D005564 2.7e-46 189.9 176 58.5
Hma1.2p1_1076F.1_g254560 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 1.0e-45 188.0 123 74.0
GSVIVG01001867001 Vitis vinifera HOM05D004599 ORTHO05D005564 5.7e-44 182.2 111 77.5
Pp3c16_6180 Physcomitrium patens HOM05D004599 ORTHO05D005564 9.7e-44 181.4 236 43.2
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 5.3e-42 175.6 215 46.0
CAN.G404.62 Capsicum annuum HOM05D004599 ORTHO05D005564 1.2e-41 174.5 115 81.7
Eucgr.B02965 Eucalyptus grandis HOM05D004599 ORTHO05D005564 2.5e-39 166.8 161 56.5
CDE05G1749 Ceratophyllum demersum HOM05D004599 ORTHO05D005564 6.1e-38 162.2 202 42.6
Mapoly0081s0062 Marchantia polymorpha HOM05D004599 ORTHO05D005564 1.3e-35 154.5 281 35.9
Actinidia25093 Actinidia chinensis HOM05D004599 ORTHO05D005564 5.2e-29 132.5 72 84.7
unitig_32.g10859 Utricularia gibba HOM05D004599 ORTHO05D005564 4.4e-28 129.4 147 46.9
SMO358G0364 Selaginella moellendorffii HOM05D004599 ORTHO05D005564 2.4e-26 123.6 291 32.0
Peaxi162Scf00125g01025 Petunia axillaris HOM05D004599 ORTHO05D005564 1.5e-20 104.4 62 77.4
arahy.Tifrunner.gnm1.ann1.3XS7JF Arachis hypogaea HOM05D004599 ORTHO05D005564 1.7e-19 100.9 79 62.0
MCO03G582 Micromonas commoda HOM05D004599 ORTHO05D005564 1.2e-09 68.2 97 37.1
CDE05G1922 Ceratophyllum demersum HOM05D004599 ORTHO05D005564 2.0e-09 67.4 41 75.6


User provided reference genes

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