Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 5.1e-218 760.8 379 100.0
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.6e-211 739.2 379 97.6
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.6e-203 712.6 379 95.0
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.0e-182 642.5 383 85.6
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 1.0e-165 587.0 385 80.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.6e-158 561.6 353 83.0
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.5e-156 556.6 353 81.9
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.1e-122 444.1 387 62.0
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.3e-120 437.2 357 65.5
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.0e-117 427.6 330 66.4
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 1.3e-117 427.2 304 70.1
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.0e-117 426.0 330 66.1
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 7.4e-116 421.4 331 64.7
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 7.6e-113 411.4 308 67.2
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.7e-112 410.2 330 65.5
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 2.9e-112 409.5 293 70.0
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.9e-111 406.8 295 69.5
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 9.3e-111 404.4 374 57.0
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 1.2e-110 404.1 344 62.8
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.0e-109 401.0 270 73.0
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 1.3e-109 400.6 386 57.5
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.8e-109 400.2 406 54.7
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.8e-109 400.2 276 70.7
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.3e-109 399.8 295 67.1
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.9e-108 396.7 311 65.3
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 5.7e-108 395.2 346 59.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 5.7e-108 395.2 302 66.9
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 9.7e-108 394.4 303 67.0
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 9.7e-108 394.4 299 65.9
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.3e-107 394.0 295 66.8
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 1.3e-107 394.0 303 66.7
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 3.7e-107 392.5 290 67.6
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.8e-107 392.1 290 69.7
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 6.3e-107 391.7 390 56.7
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 1.1e-106 391.0 371 58.8
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.4e-106 390.6 372 57.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.1e-106 389.4 290 69.3
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.2e-105 387.5 325 61.8
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.2e-105 387.5 302 66.2
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 2.0e-105 386.7 311 65.9
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 2.0e-105 386.7 303 64.7
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.6e-105 386.3 362 58.3
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 5.9e-105 385.2 377 56.8
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 5.9e-105 385.2 307 65.5
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.7e-104 383.6 292 65.1
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.9e-104 382.9 297 63.6
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.9e-104 382.9 322 61.8
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 5.0e-104 382.1 302 63.9
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 6.5e-104 381.7 300 64.3
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 6.5e-104 381.7 292 64.7
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 8.5e-104 381.3 377 56.2
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 8.5e-104 381.3 375 56.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.4e-103 380.6 288 67.4
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 3.2e-103 379.4 329 61.1
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 3.2e-103 379.4 330 60.6
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 5.5e-103 378.6 271 67.2
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 9.3e-103 377.9 306 63.4
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 9.3e-103 377.9 330 60.9
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.6e-102 377.1 380 55.8
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 2.1e-102 376.7 375 56.3
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.7e-102 376.3 310 62.6
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 3.6e-102 375.9 294 62.9
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 4.6e-102 375.6 283 65.0
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 6.1e-102 375.2 304 63.2
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 7.9e-102 374.8 332 59.9
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.0e-101 374.4 321 59.8
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 3.9e-101 372.5 313 59.4
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 5.1e-101 372.1 374 54.8
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.7e-101 371.7 321 59.2
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.5e-100 370.5 294 62.2
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.8e-99 366.3 302 62.9
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 6.3e-99 365.2 295 64.7
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.4e-98 364.0 294 63.6
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 3.1e-98 362.8 373 53.6
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 4.1e-98 362.5 400 53.8
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 9.1e-98 361.3 375 53.1
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.0e-97 360.1 272 67.3
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.3e-96 357.5 377 53.6
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 1.7e-96 357.1 376 51.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.8e-96 355.9 378 52.6
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 3.8e-96 355.9 333 59.5
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.1e-95 354.4 410 51.0
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.5e-95 353.2 294 61.2
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.5e-95 352.1 310 58.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.1e-94 350.1 252 69.0
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.4e-93 347.4 373 52.0
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.9e-93 345.9 371 52.6
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.9e-93 345.9 293 61.8
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.5e-92 344.0 328 54.9
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 3.3e-92 342.8 382 51.0
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 4.4e-92 342.4 310 58.4
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 7.4e-92 341.7 297 59.6
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 7.4e-92 341.7 269 62.1
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 6.3e-91 338.6 276 58.7
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 2.4e-90 336.7 378 50.8
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 4.1e-90 335.9 369 51.5
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 5.3e-90 335.5 274 62.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 6.9e-90 335.1 314 56.4
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 9.1e-90 334.7 261 64.8
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.2e-89 334.3 338 53.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.6e-89 333.2 246 66.7
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 4.5e-89 332.4 378 50.5
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 4.5e-89 332.4 378 50.5
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 5.9e-89 332.0 488 44.7
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.9e-88 329.7 341 53.4
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.8e-88 329.3 355 52.1
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 8.5e-88 328.2 239 68.6
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.4e-87 327.4 283 59.0
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 4.2e-87 325.9 225 69.3
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 5.5e-87 325.5 245 66.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.5e-79 300.1 304 52.3
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 5.9e-73 278.9 308 48.7
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.1e-70 270.4 313 50.2
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 4.7e-70 269.2 228 58.8
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 4.4e-68 262.7 230 58.3
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 3.5e-65 253.1 177 69.5
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.0e-61 239.6 311 43.4
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 9.8e-60 235.0 190 57.4
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.0e-56 224.9 306 44.1
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.9e-42 177.6 234 41.9
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.6e-41 174.5 138 64.5
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 4.6e-41 172.9 287 39.0
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.3e-37 160.6 143 58.7
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 2.3e-24 117.5 356 28.7
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 6.9e-21 105.9 73 71.2
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.7e-16 89.0 64 70.3
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 8.4e-11 72.4 44 75.0
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 9.3e-10 68.9 84 42.9


User provided reference genes

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