Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.9e-110 402.5 198 100.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 6.0e-109 397.5 198 98.5
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 2.3e-100 369.0 197 90.4
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.5e-99 365.5 197 89.3
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 9.5e-99 363.6 195 90.3
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.2e-98 363.2 197 88.8
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.4e-89 332.4 198 77.3
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 1.3e-87 326.6 196 75.5
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.9e-86 322.8 198 71.7
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.2e-86 322.0 197 77.2
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 7.1e-86 320.9 197 72.6
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.6e-85 319.7 198 74.2
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 3.5e-85 318.5 197 74.6
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 6.0e-85 317.8 198 74.7
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 7.8e-85 317.4 197 74.1
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.0e-84 315.5 198 72.7
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 8.7e-84 313.9 198 72.2
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.5e-83 313.2 197 71.6
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.5e-83 313.2 198 72.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.9e-83 312.8 198 71.2
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.5e-83 312.4 198 72.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.3e-83 312.0 196 71.4
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 5.6e-83 311.2 198 71.2
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 9.6e-83 310.5 197 72.1
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.3e-82 310.1 198 72.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.6e-82 309.7 198 70.7
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.6e-82 309.7 198 73.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 71.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 2.8e-82 308.9 197 74.1
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.6e-82 308.5 197 73.1
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.8e-82 308.1 198 74.2
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.2e-82 307.8 198 73.2
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 70.2
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.1e-81 305.4 196 73.0
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 70.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 70.2
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 67.7
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 68.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.5e-80 303.1 196 71.9
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 68.7
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 70.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 3.4e-80 302.0 197 68.0
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 69.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 4.4e-80 301.6 198 69.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 4.4e-80 301.6 197 68.0
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.3e-79 300.1 197 70.1
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.7e-79 299.7 198 70.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.2e-79 299.3 197 70.1
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 2.2e-79 299.3 196 68.9
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 4.9e-79 298.1 197 70.1
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 70.2
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.2e-78 295.4 195 69.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 68.7
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 69.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 70.2
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 68.2
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 7.1e-78 294.3 197 68.5
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 9.3e-78 293.9 183 74.3
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 68.2
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 69.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 66.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 68.2
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 68.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-77 293.1 183 74.9
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 69.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 68.2
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 67.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 68.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 68.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.3e-76 290.0 196 68.4
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.3e-76 290.0 183 72.1
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 65.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.3e-76 289.3 197 67.0
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.3e-76 289.3 192 66.7
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 66.2
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 3.9e-76 288.5 197 66.5
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 68.7
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 67.7
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 67.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.5e-75 286.6 197 66.5
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.3e-75 285.4 194 64.4
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 66.2
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 65.7
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.3e-75 285.0 195 67.2
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.6e-75 284.6 197 65.5
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 5.6e-75 284.6 191 67.0
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 64.6
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 7.3e-75 284.3 191 68.1
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 65.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 66.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.3e-74 283.5 188 69.7
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 67.2
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.1e-74 282.7 198 67.2
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.8e-74 282.3 196 66.8
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 3.6e-74 282.0 186 70.4
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-73 280.4 184 68.5
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.4e-73 280.0 187 69.0
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.8e-73 279.6 198 64.6
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 3.1e-73 278.9 186 70.4
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 68.5
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 68.5
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 6.9e-73 277.7 194 69.1
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 9.0e-73 277.3 196 63.8
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 64.1
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 64.1
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 3.4e-72 275.4 198 65.7
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.5e-72 275.0 198 63.1
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 8.4e-71 270.8 186 68.3
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.4e-70 269.2 199 63.3
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 4.2e-70 268.5 191 65.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.8e-68 263.1 178 68.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 2.3e-68 262.7 198 64.1
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.1e-67 260.4 198 60.6
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 2.5e-67 259.2 198 61.6
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 4.3e-67 258.5 183 67.8
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 7.4e-67 257.7 198 62.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.1e-66 256.1 196 63.3
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.0e-64 249.6 183 65.0
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.9e-63 245.7 143 77.6
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 6.5e-63 244.6 162 70.4
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.4e-62 243.4 190 58.4
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.3e-60 236.9 114 98.2
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 8.7e-60 234.2 144 75.7
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.3e-58 230.3 156 69.2
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.6e-58 229.9 169 63.3
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.4e-57 226.1 144 67.4
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.0e-55 220.7 193 52.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 8.4e-55 217.6 187 55.1
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.5e-54 214.9 197 51.3
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 9.3e-54 214.2 144 64.6
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 4.6e-53 211.8 156 61.5
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 3.9e-52 208.8 181 53.0
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 5.1e-44 181.8 126 64.3
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 5.7e-43 178.3 199 47.2
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 6.3e-42 174.9 98 76.5
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.4e-41 173.7 198 47.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 5.1e-36 155.2 181 42.5
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.4e-33 147.1 180 45.0
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.4e-33 146.4 185 45.4
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 3.5e-24 115.9 179 36.3
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.5e-24 115.5 118 49.2
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 2.2e-23 113.2 74 62.2
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 6.5e-23 111.7 106 50.0
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 7.2e-22 108.2 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.2e-21 107.5 105 49.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.8e-20 103.6 120 45.0
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.2e-20 102.1 64 67.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.2e-19 100.9 194 36.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 3.1e-17 92.8 71 53.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.0e-12 76.3 58 58.6
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 4.1e-09 65.9 43 65.1
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 7.3e-06 55.1 35 68.6


User provided reference genes

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