Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.1e-95 350.1 166 100.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.4e-57 225.3 187 66.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 4.0e-50 201.8 186 60.2
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.2e-47 192.2 163 65.0
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 4.6e-46 188.3 187 59.4
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.5e-41 171.8 178 55.6
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 4.9e-40 168.3 182 54.9
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.9e-39 166.4 182 54.4
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.1e-36 157.1 178 51.7
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.1e-35 152.9 173 52.6
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.9e-31 139.8 154 54.5
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.3e-29 132.9 171 48.5
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.3e-28 128.6 192 44.8
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.3e-28 128.6 192 44.8
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.4e-26 123.6 191 45.0
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.4e-23 113.6 192 43.2
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.7e-22 109.4 194 42.8
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.3e-21 106.3 93 63.4
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 5.1e-21 105.1 187 41.2
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.9e-20 103.2 190 40.0
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 4.3e-20 102.1 183 42.6
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 4.3e-20 102.1 191 38.2
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 5.7e-20 101.7 183 42.1
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 7.4e-20 101.3 186 41.9
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.2e-19 99.8 187 37.4
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 3.7e-19 99.0 192 39.1
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.8e-18 96.7 187 38.5
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 4.1e-18 95.5 191 37.2
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-17 94.0 164 39.6
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.6e-17 92.8 127 45.7
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.6e-17 92.8 127 45.7
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 5.9e-17 91.7 193 36.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 7.7e-17 91.3 182 39.6
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.3e-16 90.5 185 35.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.2e-16 89.7 144 39.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.8e-16 89.0 187 36.4
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 8.5e-16 87.8 191 35.1
Solyc04g010140.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 8.5e-16 87.8 55 80.0
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.4e-15 87.0 184 37.5
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 4.2e-15 85.5 181 37.0
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 7.2e-15 84.7 188 37.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 9.4e-15 84.3 127 41.7
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.2e-14 84.0 185 38.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 4.6e-14 82.0 191 37.2
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.0e-13 80.9 126 43.7
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.8e-13 80.1 186 37.1
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 3.0e-13 79.3 189 34.4
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.0e-13 79.3 183 36.1
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 3.9e-13 79.0 188 36.2
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.9e-13 79.0 183 35.0
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 3.9e-13 79.0 186 34.9
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.9e-13 79.0 184 37.5
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.5e-12 77.0 190 35.8
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 3.3e-12 75.9 125 41.6
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 7.4e-12 74.7 187 36.9
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 7.4e-12 74.7 191 35.1
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 9.7e-12 74.3 183 31.7
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 9.7e-12 74.3 188 36.7
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.7e-12 74.3 65 64.6
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.3e-11 73.9 165 32.7
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.8e-11 72.8 165 32.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.8e-11 72.8 165 32.7
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 3.7e-11 72.4 191 35.6
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 8.2e-11 71.2 185 34.6
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 3.1e-10 69.3 128 39.1
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 3.1e-10 69.3 184 33.7
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 6.9e-10 68.2 184 33.7
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.1e-10 67.8 128 38.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.2e-09 67.4 128 38.3
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 1.2e-09 67.4 181 35.9
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-09 66.6 73 54.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.4e-09 65.9 194 36.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.5e-09 65.5 128 37.5
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.9e-09 65.1 55 61.8
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-08 64.3 177 32.2
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.2e-08 63.2 177 32.8
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 5.0e-08 62.0 172 32.6
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 6.5e-08 61.6 137 34.3
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 8.5e-08 61.2 124 37.1
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 1.4e-07 60.5 184 34.2
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 1.4e-07 60.5 173 33.5
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.9e-07 60.1 177 32.8
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.5e-07 58.5 177 32.2
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.4e-07 57.8 123 36.6


User provided reference genes

Program Settings