Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011470 Solanum tuberosum HOM05D007397 ORTHO05D009336 7.2e-96 354.0 190 100.0
Solyc04g010190.1 Solanum lycopersicum HOM05D007397 ORTHO05D009336 4.3e-88 328.2 190 92.6
Sopen04g005370 Solanum pennellii HOM05D007397 ORTHO05D009336 5.6e-88 327.8 192 93.2
Nitab4.5_0007221g0040 Nicotiana tabacum HOM05D007397 ORTHO05D009336 8.1e-63 244.2 190 71.6
Cc02_g08640 Coffea canephora HOM05D007397 ORTHO05D009336 1.3e-60 236.9 195 67.2
Oeu044824.1 Olea europaea HOM05D007397 ORTHO05D009336 2.3e-57 226.1 196 66.8
MSTRG.7898 Avicennia marina HOM05D007397 ORTHO05D009336 8.7e-57 224.2 194 69.6
SGA_v2.0_scaffold165G38243 Striga asiatica HOM05D007397 ORTHO05D009336 9.6e-56 220.7 198 65.2
Haze_16973 Corylus avellana HOM05D007397 ORTHO05D009336 6.2e-55 218.0 191 67.5
CSS0023256 Camellia sinensis var. sinensis HOM05D007397 ORTHO05D009336 1.8e-54 216.5 193 65.8
Hma1.2p1_0348F.1_g131665 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 5.8e-53 211.5 191 66.0
Hma1.2p1_0348F.1_g131670 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 5.8e-53 211.5 191 66.0
Cfa001558 Carpinus fangiana HOM05D007397 ORTHO05D009336 7.6e-53 211.1 191 66.0
MELO3C025487.2 Cucumis melo HOM05D007397 ORTHO05D009336 8.4e-52 207.6 189 63.5
Migut.L01413 Erythranthe guttata HOM05D007397 ORTHO05D009336 2.4e-51 206.1 169 68.0
Actinidia38224 Actinidia chinensis HOM05D007397 ORTHO05D009336 3.2e-51 205.7 188 66.0
CiPaw.01G279900 Carya illinoinensis HOM05D007397 ORTHO05D009336 3.2e-51 205.7 191 61.3
GSVIVG01032626001 Vitis vinifera HOM05D007397 ORTHO05D009336 3.2e-51 205.7 202 60.9
ClCG09G020320 Citrullus lanatus HOM05D007397 ORTHO05D009336 6.0e-50 201.4 188 63.3
Sp3g10540 Schrenkiella parvula HOM05D007397 ORTHO05D009336 6.0e-50 201.4 183 63.4
Glyma.06G097000 Glycine max HOM05D007397 ORTHO05D009336 1.0e-49 200.7 157 68.8
Nitab4.5_0006737g0020 Nicotiana tabacum HOM05D007397 ORTHO05D009336 1.0e-49 200.7 154 72.7
Dinv25942 Davidia involucrata HOM05D007397 ORTHO05D009336 1.3e-49 200.3 183 66.1
Carub.0003s1170 Capsella rubella HOM05D007397 ORTHO05D009336 3.0e-49 199.1 180 65.6
Cpa.g.sc1.304 Carica papaya HOM05D007397 ORTHO05D009336 3.0e-49 199.1 187 63.6
CAN.G1557.1 Capsicum annuum HOM05D007397 ORTHO05D009336 8.7e-49 197.6 118 89.8
FAN03G3257 Fragaria x ananassa HOM05D007397 ORTHO05D009336 8.7e-49 197.6 175 64.6
Thhalv10021616m.g Eutrema salsugineum HOM05D007397 ORTHO05D009336 1.5e-48 196.8 179 63.7
Medtr1g115740 Medicago truncatula HOM05D007397 ORTHO05D009336 1.9e-48 196.4 188 56.4
Glyma.04G095200 Glycine max HOM05D007397 ORTHO05D009336 3.3e-48 195.7 189 60.3
Lj5g0010768 Lotus japonicus HOM05D007397 ORTHO05D009336 4.3e-48 195.3 189 58.7
Potri.010G213600 Populus trichocarpa HOM05D007397 ORTHO05D009336 7.3e-48 194.5 189 59.3
AL3G23990 Arabidopsis lyrata HOM05D007397 ORTHO05D009336 9.6e-48 194.1 184 62.0
AT3G12345 Arabidopsis thaliana HOM05D007397 ORTHO05D009336 9.6e-48 194.1 180 62.8
TAR320G0002 Trochodendron aralioides HOM05D007397 ORTHO05D009336 2.1e-47 193.0 192 59.4
CANSAT64G2695 Cannabis sativa HOM05D007397 ORTHO05D009336 2.8e-47 192.6 192 58.9
CARHR086880 Cardamine hirsuta HOM05D007397 ORTHO05D009336 2.8e-47 192.6 179 62.6
PGR142G1402 Punica granatum HOM05D007397 ORTHO05D009336 4.8e-47 191.8 195 59.0
Potri.008G047800 Populus trichocarpa HOM05D007397 ORTHO05D009336 6.2e-47 191.4 189 59.8
HanXRQChr14g0460741 Helianthus annuus HOM05D007397 ORTHO05D009336 8.1e-47 191.0 185 61.6
Lj1P929T40 Lonicera japonica HOM05D007397 ORTHO05D009336 1.1e-46 190.7 145 69.0
AUR62042666 Chenopodium quinoa HOM05D007397 ORTHO05D009336 1.8e-46 189.9 192 58.9
Rhsim09G0155900 Rhododendron simsii HOM05D007397 ORTHO05D009336 1.8e-46 189.9 187 59.9
EL10Ac2g03499 Beta vulgaris HOM05D007397 ORTHO05D009336 2.4e-46 189.5 173 62.4
Aqoxy5G01687 Aquilegia oxysepala HOM05D007397 ORTHO05D009336 3.1e-46 189.1 190 61.1
SalBow2G2387 Salvia bowleyana HOM05D007397 ORTHO05D009336 5.3e-46 188.3 189 58.7
Sc06g0001870 Simmondsia chinensis HOM05D007397 ORTHO05D009336 5.3e-46 188.3 168 60.7
Ca_11323_v3 Cicer arietinum L. HOM05D007397 ORTHO05D009336 6.9e-46 188.0 190 60.0
Sabra08G0033900 Salix brachista HOM05D007397 ORTHO05D009336 1.5e-45 186.8 194 58.2
THA.LOC104827311 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 1.5e-45 186.8 184 60.3
FAN01G1406 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.0e-45 186.4 175 61.1
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 3.4e-45 185.7 178 59.6
MD07G1184800 Malus domestica HOM05D007397 ORTHO05D009336 3.4e-45 185.7 191 58.6
TWI38G1005 Tripterygium wilfordii HOM05D007397 ORTHO05D009336 3.4e-45 185.7 194 60.3
Prupe.2G224700 Prunus persica HOM05D007397 ORTHO05D009336 5.8e-45 184.9 191 58.6
BraA05t22502Z Brassica rapa HOM05D007397 ORTHO05D009336 7.6e-45 184.5 177 58.2
FAN01G1537 Fragaria x ananassa HOM05D007397 ORTHO05D009336 7.6e-45 184.5 175 60.6
C05p55480 Brassica napus HOM05D007397 ORTHO05D009336 2.2e-44 183.0 182 57.7
BolC5t34214H Brassica oleracea HOM05D007397 ORTHO05D009336 2.2e-44 183.0 182 57.7
A05p37050 Brassica napus HOM05D007397 ORTHO05D009336 3.8e-44 182.2 177 58.8
Aa31sc153G60 Aethionema arabicum HOM05D007397 ORTHO05D009336 4.9e-44 181.8 186 61.8
CsaV3_5G026110 Cucumis sativus L. HOM05D007397 ORTHO05D009336 4.9e-44 181.8 183 60.7
THA.LOC104809886 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 8.4e-44 181.0 184 58.7
BcaC05g29269 Brassica carinata HOM05D007397 ORTHO05D009336 1.4e-43 180.3 182 57.1
Peaxi162Scf00135g00025 Petunia axillaris HOM05D007397 ORTHO05D009336 1.4e-43 180.3 195 57.9
Nn2g12828 Nelumbo nucifera HOM05D007397 ORTHO05D009336 3.2e-43 179.1 159 62.3
Phvul.009G036400 Phaseolus vulgaris HOM05D007397 ORTHO05D009336 3.2e-43 179.1 189 57.1
TPR.G10388 Trifolium pratense HOM05D007397 ORTHO05D009336 3.2e-43 179.1 191 55.0
Psat6g239080 Pisum sativum HOM05D007397 ORTHO05D009336 4.2e-43 178.7 190 53.7
MBI05_g32638_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 9.3e-43 177.6 167 59.3
unitig_22.g6935 Utricularia gibba HOM05D007397 ORTHO05D009336 1.2e-42 177.2 189 58.2
Gohir.D10G218000 Gossypium hirsutum HOM05D007397 ORTHO05D009336 2.1e-42 176.4 191 59.2
RcHm_v2.0_Chr1g0365021 Rosa chinensis HOM05D007397 ORTHO05D009336 2.1e-42 176.4 176 58.5
Sed0011140 Sechium edule HOM05D007397 ORTHO05D009336 4.6e-42 175.3 193 56.5
Thecc.10G062300 Theobroma cacao HOM05D007397 ORTHO05D009336 4.6e-42 175.3 174 59.8
DCAR_015250 Daucus carota HOM05D007397 ORTHO05D009336 7.9e-42 174.5 139 64.7
VMungo1309G1572 Vigna mungo HOM05D007397 ORTHO05D009336 7.9e-42 174.5 189 55.0
Lalb_Chr06g0164111 Lupinus albus HOM05D007397 ORTHO05D009336 1.3e-41 173.7 188 56.4
PSO384G5114 Papaver somniferum HOM05D007397 ORTHO05D009336 1.8e-41 173.3 205 54.6
QL08p057549 Quercus lobata HOM05D007397 ORTHO05D009336 1.8e-41 173.3 191 55.0
Gorai.011G244600 Gossypium raimondii HOM05D007397 ORTHO05D009336 8.7e-41 171.0 191 57.1
BcaB04g21083 Brassica carinata HOM05D007397 ORTHO05D009336 3.3e-40 169.1 184 56.0
BcaB04g21085 Brassica carinata HOM05D007397 ORTHO05D009336 3.3e-40 169.1 184 56.0
PSO339G5749 Papaver somniferum HOM05D007397 ORTHO05D009336 1.3e-39 167.2 202 51.5
Gohir.A10G209700 Gossypium hirsutum HOM05D007397 ORTHO05D009336 3.1e-38 162.5 187 54.5
AUR62025539 Chenopodium quinoa HOM05D007397 ORTHO05D009336 1.5e-37 160.2 192 54.2
Atru.chr12.591 Acer truncatum HOM05D007397 ORTHO05D009336 4.9e-36 155.2 192 51.0
FAN10G1155 Fragaria x ananassa HOM05D007397 ORTHO05D009336 4.9e-36 155.2 170 55.9
ATR0681G332 Amborella trichopoda HOM05D007397 ORTHO05D009336 2.5e-35 152.9 181 48.6
CDE02G3908 Ceratophyllum demersum HOM05D001333 ORTHO05D001208 1.6e-34 150.2 154 51.3
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 1.3e-33 147.1 146 58.2
Duzib106G0993 Durio zibethinus HOM05D007397 ORTHO05D009336 1.8e-33 146.7 109 67.0
COL.COLO4_37769 Corchorus olitorius HOM05D007397 ORTHO05D009336 6.7e-33 144.8 183 50.8
MBI05_g30757_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 1.9e-32 143.3 143 55.2
Mapoly0043s0078 Marchantia polymorpha HOM05D007397 ORTHO05D009336 2.8e-31 139.4 135 52.6
HPP92_025097 Vanilla planifolia HOM05D007397 ORTHO05D009336 8.2e-31 137.9 196 43.9
Ciclev10034008m.g Citrus clementina HOM05D007397 ORTHO05D009336 3.1e-30 136.0 88 72.7
SEGI_38306 Sequoiadendron giganteum HOM05D007397 ORTHO05D009336 7.6e-29 131.3 167 46.7
Manes.10G039600 Manihot esculenta HOM05D007397 ORTHO05D009336 1.3e-28 130.6 192 47.4
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 5.5e-27 125.2 144 47.9
Cfa009156 Carpinus fangiana HOM05D007397 ORTHO05D009336 2.5e-24 116.3 137 54.7
Os06g0484500 Oryza sativa ssp. japonica HOM05D007397 ORTHO05D009336 7.4e-24 114.8 150 44.7
Zm00001eb397310 Zea mays HOM05D007397 ORTHO05D009336 2.9e-20 102.8 194 41.8
Duzib114G0919 Durio zibethinus HOM05D007397 ORTHO05D009336 4.6e-18 95.5 123 50.4
AagrBONN_evm.TU.Sc2ySwM_368.51 Anthoceros agrestis HOM05D007397 ORTHO05D009336 2.5e-16 89.7 110 46.4
C03p57580 Brassica napus HOM05D007397 ORTHO05D009336 3.1e-14 82.8 116 42.2
BcaC03g17725 Brassica carinata HOM05D007397 ORTHO05D009336 7.7e-13 78.2 110 42.7


User provided reference genes

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